View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16295_low_5 (Length: 317)
Name: NF16295_low_5
Description: NF16295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16295_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 32936821 - 32937108
Alignment:
| Q |
13 |
aatatctaatgcaaaattacaatacattaccattttctattatcatattctttaatagaaactggaatatgcaatttttcaacactctttttgagctaat |
112 |
Q |
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| T |
32936821 |
aatatctaatgcaaaattacaatacattaccattttctattatcatattctttaatagaaactggaatatgcaatttttcaacactctttttcagctaat |
32936920 |
T |
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| Q |
113 |
gaaaaaggaaactaaaatggatttatcgatgaatcatttctctgttttgttttgcaggaattttaccatgtgcaatgttaatacccgggttgtacttcat |
212 |
Q |
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| T |
32936921 |
gaaaaaggaaactaaaacggatttatcgatgaatcatttctctgttttgttttgcaggaattttaccatgtgcaatattaatacccgggttgtacttcat |
32937020 |
T |
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| Q |
213 |
tccagaatcacctagatggttggtatgcatcatattcattcatttgatgtatatactacactattacctatttttgtcacactttatt |
300 |
Q |
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| T |
32937021 |
tccagaatcacctagatggttggtatgcatcatattcattcatttgatgtatatactacactattacctatttttgtcacactttatt |
32937108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 32929253 - 32929330
Alignment:
| Q |
167 |
caggaattttaccatgtgcaatgttaatacccgggttgtacttcattccagaatcacctagatggttggtatgcatca |
244 |
Q |
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| T |
32929253 |
caggaattttgccttgtacagtattaatacccggattgtttttcataccagaatctcctagatggttggtatggatca |
32929330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 7753908 - 7753836
Alignment:
| Q |
167 |
caggaattttaccatgtgcaatgttaatacccgggttgtacttcattccagaatcacctagatggttggtatg |
239 |
Q |
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| T |
7753908 |
caggaattttaccatgtacaatattaatacctggattatttttcataccagaatcaccaagatggttggtatg |
7753836 |
T |
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