View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16295_low_9 (Length: 280)
Name: NF16295_low_9
Description: NF16295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16295_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 32936844 - 32936574
Alignment:
| Q |
1 |
tattgtaattttgcattagatattgttagatggactttgattatcaatctcaaaagctagctattagcttgtaagattagggtactgcaacctatatacg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32936844 |
tattgtaattttgcattagatattattagatggactttgaatatcaatctcaaaagctagctattagcttgtaagattagggtactgcaacctatatacg |
32936745 |
T |
|
| Q |
101 |
tatataaaagagaaccttgacaatgcgaccttaatacaacttcgtccacccttatgcttagcgtgggtcctagactcaattctcacattgtcatctttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32936744 |
tatataaaagagaaccttgacaatgcgaccttaatacaacttcgtccacccttatgcttagcgtgggtcctagactcaattctcacattgtcgtct---- |
32936649 |
T |
|
| Q |
201 |
ccttaaccaactctaatattgtatcaaatgagcttgaatctaactctcaaaagttaactcataaaatgatgatgtcc |
277 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| |
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| T |
32936648 |
--ttaaccaactctgatattatatcaaatgagcttgaatctaactctcagaagttaactcattaaatgatggtgtcc |
32936574 |
T |
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