View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16296_high_1 (Length: 706)
Name: NF16296_high_1
Description: NF16296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16296_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 630; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 28 - 686
Target Start/End: Original strand, 6193767 - 6194425
Alignment:
| Q |
28 |
ggaatagcctcgggatacttgttcctagttgacaagcatcaacactgttatagttgtagctgcggacggccacacggagtcttcttacagacacattatg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6193767 |
ggaatagcctcgggatacttgttcctagttgacaagcatcaacactgttatagttgtagctgcggacggccacacggagtcttcttacagacacattatg |
6193866 |
T |
|
| Q |
128 |
aaacacagcactcatcattgttaaattgagactttccattataagtccaagtgaatgtccgtccaaattcaagctgttactgaatgaaatatgtttggtt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6193867 |
aaacacagcactcatcattgttaaattgagactttccattataagtccaagtgaatgtccgtccaaattcaagctgttgctgaatgaaatatgtttggtt |
6193966 |
T |
|
| Q |
228 |
tttccgatcatctttgttgctaannnnnnnagatttgacactgaaaccagcgatgtgcagttaactgcatttaacagtgtgattagaggtggaagctctg |
327 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6193967 |
tttccgatcatctttgttgctaatttttttagatttgacactgaaaccagcgatgtgcagttaactgcatttaacagtgtgattagaggtggaagctctg |
6194066 |
T |
|
| Q |
328 |
gtatgcactcaagcttcctgcaattcaccaaagacaaaatttccagttcttcaagtttcttaatgctttgaggcaacattttcatgttgcttccatcaag |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6194067 |
gtatgcactcaagcttcctgcaattcaccaaagacaaaatttccagttcttcaagtttcttaatgctttgaggcaacattttcatgttgcttccatcaag |
6194166 |
T |
|
| Q |
428 |
gtttaattccattaactttgatgcaacgtggacgttgttggggagttcaaactggtttataaaatccttcatatgtagtatttgtagggattgtaagcca |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6194167 |
gtttaattccattaactttgatgcaacgtggacgttgttggggagttcaaactggtttataaaatccttcatatgtagtatttgtagggattgtaagcca |
6194266 |
T |
|
| Q |
528 |
tcaaacagctcatgtagctgttttttctcaactattagtctactgccagaaatcttcaattccctaatagatctcacactagataactccttcggaatac |
627 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6194267 |
tcaaacaactcatgtagctgttttttctcaactattagtctactgccagaaatcttcaattccctaatagatctcacactagataactccttcggaatac |
6194366 |
T |
|
| Q |
628 |
ggttgagtcttaaactctctagattaagttgtttgagtttttgaagacgtccaattgat |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6194367 |
ggttgagtcttaaactctctagattaagttgtttgagtttttgaagacgtccaattgat |
6194425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 36 - 686
Target Start/End: Original strand, 6069389 - 6070045
Alignment:
| Q |
36 |
ctcgggatacttgttcctagttgacaagcatcaacactgttatagttgtagctgcggacggccacacggagtcttcttacagacacattatgaaacacag |
135 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| |||||||||| |||| ||||||||| | ||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
6069389 |
ctcgggatacatgttcctggttcacaagtatcaacactggtataattgtagctgtgaacggccacacgaagtcttcttacagacacattttgaaacacag |
6069488 |
T |
|
| Q |
136 |
cactcatcattgttaaattgagactttccattataagtccaagtgaatgtccgtccaaattcaagctgttactgaatgaaatatgtttggtttttccgat |
235 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
6069489 |
cactcatcattgttaaattgagacttttcattataagggtaagtgaatgtccatccaaattcaagctgttactgaatgaaatgtgtttggtttttcccat |
6069588 |
T |
|
| Q |
236 |
catctttgttgctaannnnnnnagatttgacactgaaaccagcgatgtgcagttaactgcatttaacagtgtgattagaggtggaagctctggtatgcac |
335 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || ||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
6069589 |
catctttgttgctaatttttttagatttgacactgaaattagtgatgtgcagtttactgcatttaacattgtgatgagaggtggaagctctggtatgcac |
6069688 |
T |
|
| Q |
336 |
tcaagcttcctgcaattcaccaaagacaaaatttccagttcttcaagtttcttaatgctttgaggcaacattttcatgttgcttccatcaaggtttaatt |
435 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||||| ||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
6069689 |
tcaagctccctgcaattcaccaaagacaaaatttccaattcttcaagctttttaatgctttcaggcaacctcttcatgttgcttccatcaaggtttaatt |
6069788 |
T |
|
| Q |
436 |
ccattaactttgatgcaacgtggacgttgttggggagttcaaactggttt------ataaaatccttcatatgtagtatttgtagggattgtaagccatc |
529 |
Q |
| |
|
|||||||||||||| |||||| || |||||||||||| |||||||||||| | |||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
6069789 |
ccattaactttgatacaacgtcgatgttgttggggaggtcaaactggtttacaaaaacaaaatccttcatatgtagtattcgtagggatcgtaagccatc |
6069888 |
T |
|
| Q |
530 |
aaacagctcatgtagctgttttttctcaactattagtctactgccagaaatcttcaattccctaatagatctcacactagataactccttcggaatacgg |
629 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||| ||||||||| |||| | || |
|
|
| T |
6069889 |
aaacagctcatgtagctgttgtttctcaactattagtctactgccagaaatcttcaactcccttagagatatcacactaggtaactcctttggaagatgg |
6069988 |
T |
|
| Q |
630 |
ttgagtcttaaactctctagattaagttgtttgagtttttgaagacgtccaattgat |
686 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | ||| |||||| ||||||||| |
|
|
| T |
6069989 |
ctgagtcttaaactctctagattaagtcgtttaattttgggaagacaaccaattgat |
6070045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 33 - 686
Target Start/End: Complemental strand, 37453202 - 37452549
Alignment:
| Q |
33 |
agcctcgggatacttgttcctagttgacaagcatcaacactgttatagttgtagctgcggacggccacacggagtcttcttacagacacattatgaaaca |
132 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37453202 |
agcctcgggatacttgttcctggtcgacaagcatcaacactgttatagttgtagctgtgaactttcacacggagtcttcttacagacacattttgaaaca |
37453103 |
T |
|
| Q |
133 |
cagcactcatcattgttaaattgagactttccattataagtccaagtgaatgtccgtccaaattcaagctgttactgaatgaaatatgtttggtttttcc |
232 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37453102 |
cagcactcatcattgttaaattgagattttccattataaggctgagtgaatgtccatccaaattcaagctgttactgaatgaaatgtgtttggtttttcc |
37453003 |
T |
|
| Q |
233 |
gatcatctttgttgctaannnnnnnagatttgacactgaaaccagcgatgtgcagttaactgcatttaacagtgtgattagaggtggaagctctggtatg |
332 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37453002 |
catcatcattgttgctaatccttttagatttgacactgaaaccagggatgtgcagttcactgcatttaacagtgtgacgagaggtggaagctctggtatg |
37452903 |
T |
|
| Q |
333 |
cactcaagcttcctgcaattcaccaaagacaaaatttccagttcttcaagtttcttaatgctttgaggcaacattttcatgttgcttccatcaaggttta |
432 |
Q |
| |
|
|||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
37452902 |
cactcaagctccctgcaattcaccaaagaaagaatttccagttcttcaagtttcttaatgctttcaggcaaccttttcatgttgctcccatcaaggttta |
37452803 |
T |
|
| Q |
433 |
attccattaactttgatgcaacgtggacgttgttggggagttcaaactggtttataaaatccttcatatgtagtatttgtagggattgtaagccatcaaa |
532 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
37452802 |
attcctttaactttgatagaacgtggatgttgttggggagttcaaactggtttatgaaatccttcatatgtagtatttgtagggattgtaatccatcgaa |
37452703 |
T |
|
| Q |
533 |
cagctcatgtagctgttttttctcaactattagtctactgccagaaatcttcaattccctaatagatctcacactagataactccttcggaatacggttg |
632 |
Q |
| |
|
||||| | || | || |||||||||||||||| |||||||||||| ||||| || ||||||||| |||||||||||||| ||| |||| || |||| |
|
|
| T |
37452702 |
gagctcctctaacaattgtttctcaactattagtgcactgccagaaattttcaactcactaatagatgtcacactagataacccctctggaagacagttg |
37452603 |
T |
|
| Q |
633 |
agtcttaaactctctagattaagttgtttgagtttttgaagacgtccaattgat |
686 |
Q |
| |
|
||| ||||||| |||||||||||| |||||||||||| ||| | ||||||||| |
|
|
| T |
37452602 |
agttttaaactatctagattaagtcgtttgagtttttcaaggctcccaattgat |
37452549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University