View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16297_low_1 (Length: 279)
Name: NF16297_low_1
Description: NF16297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16297_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 71 - 266
Target Start/End: Complemental strand, 303927 - 303732
Alignment:
| Q |
71 |
cataaaagagttgaaatattattatagttgagcaagttggtgaatgttgataggataaacaaaattggtattgccattaaaagccatccttcccataaga |
170 |
Q |
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| T |
303927 |
catagaagagttgaaatattattatagttgagcaagttggtgaatgttgataggataaacaaaattggtattgccattaaaagccatccttcccataaga |
303828 |
T |
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| Q |
171 |
atgttaactgcttctgttggatgaaatgcatcccaaaacacataacggtttctattagggcatggagtttggaatggtagacaagttatttgacct |
266 |
Q |
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| T |
303827 |
atgttaactgcttctgttggatgaaatgcatcccaaaacacataacggtttctattagggcatggagtttggaatggtagacaagttatttgacct |
303732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 304022 - 303968
Alignment:
| Q |
18 |
atcatcgatcatatgacaattttaattggaaatcaagctaggaagcaatacacca |
72 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
304022 |
atcatcgattatatgacaattttaattggaaatcaagctaggaagcaatacacca |
303968 |
T |
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