View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16298_high_1 (Length: 519)

Name: NF16298_high_1
Description: NF16298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16298_high_1
NF16298_high_1
[»] chr5 (9 HSPs)
chr5 (9-498)||(10887720-10888209)
chr5 (58-498)||(10866214-10866645)
chr5 (58-498)||(10873660-10874091)
chr5 (58-498)||(10878731-10879162)
chr5 (58-498)||(10883802-10884233)
chr5 (51-291)||(39675780-39676020)
chr5 (53-246)||(10045775-10045968)
chr5 (359-495)||(39676070-39676206)
chr5 (368-498)||(10046135-10046265)


Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 9 - 498
Target Start/End: Complemental strand, 10888209 - 10887720
Alignment:
Q  9 agaagcaaaggcagcagcaggattcacagtcacaacaaccttcttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgta 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10888209 agaaccaaaggcagcagcaggattcacagtcacaacaaccttcttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgta 10888110  T
Q  109 ctttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttcc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10888109 ctttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacatcctcacagtctctgagattgttgctgtagtttccctcatcgcttcc 10888010  T
Q  209 ttcgtctaccttattgcttttttcggcactgccttcatctttcattacgatgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggag 308  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||   ||||||||||    
T  10888009 ttcgtctaccttattgctttcttcggcactgccttcatcattcattacgatgatgatgaagacgaagtagtcgacaattctgcaaaacccaccggaggag 10887910  T
Q  309 tcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgaccagaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcggg 408  Q
    | ||||| |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10887909 ttgtgccgaagaagctacctatgttaacaccaccgaagatatctgaccaaaaagttatgtccatggaagacgaagaggttgtcggtgcagtggtatcggg 10887810  T
Q  409 atcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgtgcagcaaagattaggaaccaagcagtggagagagttaccgg 498  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10887809 atcaattccttcttactcccttgagtcgaagctcggagattgccgtcgtgcagcaaagattaggaaccaagcagtggagagggttaccgg 10887720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 58 - 498
Target Start/End: Original strand, 10866214 - 10866645
Alignment:
Q  58 actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc 157  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10866214 actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc 10866313  T
Q  158 cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg 257  Q
    |||||||||||| ||||||||||| | ||| | |||||||||||||||||||| |||||||||||  |||| ||||||| |||||||||| |||||||||    
T  10866314 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg 10866413  T
Q  258 atgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgacca 357  Q
    |||| || |||||          |||||| ||||||||   ||   ||||||| |||| ||||||||||||| |||||| ||||| ||||| || |||||    
T  10866414 atgaagaagaaga---------agacattgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgacca 10866504  T
Q  358 gaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgt 457  Q
     ||||||||||||||||||||||| ||||||||| |||| ||||| || ||||||||||| |||||||| ||||| || ||||| ||||||||||| |||    
T  10866505 aaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgt 10866604  T
Q  458 gcagcaaagattaggaaccaagcagtggagagagttaccgg 498  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  10866605 gcagcaaatattaggaaccaagcggtggagagagttaccgg 10866645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 58 - 498
Target Start/End: Complemental strand, 10874091 - 10873660
Alignment:
Q  58 actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc 157  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10874091 actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc 10873992  T
Q  158 cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg 257  Q
    |||||||||||| ||||||||||| | ||| | |||||||||||||||||||| |||||||||||  |||| ||||||| |||||||||| |||||||||    
T  10873991 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg 10873892  T
Q  258 atgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgacca 357  Q
    |||| || |||||          |||||| ||||||||   ||   ||||||| |||| ||||||||||||| |||||| ||||| ||||| || |||||    
T  10873891 atgaagaagaaga---------agacattgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgacca 10873801  T
Q  358 gaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgt 457  Q
     ||||||||||||||||||||||| ||||||||| |||| ||||| || ||||||||||| |||||||| ||||| || ||||| ||||||||||| |||    
T  10873800 aaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgt 10873701  T
Q  458 gcagcaaagattaggaaccaagcagtggagagagttaccgg 498  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  10873700 gcagcaaatattaggaaccaagccgtggagagagttaccgg 10873660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 58 - 498
Target Start/End: Complemental strand, 10879162 - 10878731
Alignment:
Q  58 actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc 157  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10879162 actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc 10879063  T
Q  158 cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg 257  Q
    |||||||||||| ||||||||||| | ||| | |||||||||||||||||||| |||||||||||  |||| ||||||| |||||||||| |||||||||    
T  10879062 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg 10878963  T
Q  258 atgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgacca 357  Q
    |||| || |||||          |||||| ||||||||   ||   ||||||| |||| ||||||||||||| |||||| ||||| ||||| || |||||    
T  10878962 atgaagaagaaga---------agacattgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgacca 10878872  T
Q  358 gaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgt 457  Q
     ||||||||||||||||||||||| ||||||||| |||| ||||| || ||||||||||| |||||||| ||||| || ||||| ||||||||||| |||    
T  10878871 aaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgt 10878772  T
Q  458 gcagcaaagattaggaaccaagcagtggagagagttaccgg 498  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  10878771 gcagcaaatattaggaaccaagccgtggagagagttaccgg 10878731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 58 - 498
Target Start/End: Complemental strand, 10884233 - 10883802
Alignment:
Q  58 actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc 157  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10884233 actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc 10884134  T
Q  158 cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg 257  Q
    |||||||||||| ||||||||||| | ||| | |||||||||||||||||||| |||||||||||  |||| ||||||| |||||||||| |||||||||    
T  10884133 cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg 10884034  T
Q  258 atgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgacca 357  Q
    |||| || |||||          |||||| ||||||||   ||   ||||||| |||| ||||||||||||| |||||| ||||| ||||| || |||||    
T  10884033 atgaagaagaaga---------agacattgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgacca 10883943  T
Q  358 gaaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgt 457  Q
     ||||||||||||||||||||||| ||||||||| |||| ||||| || ||||||||||| |||||||| ||||| || ||||| ||||||||||| |||    
T  10883942 aaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgt 10883843  T
Q  458 gcagcaaagattaggaaccaagcagtggagagagttaccgg 498  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  10883842 gcagcaaatattaggaaccaagccgtggagagagttaccgg 10883802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 51 - 291
Target Start/End: Original strand, 39675780 - 39676020
Alignment:
Q  51 cttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctac 150  Q
    |||||||||| || ||||||||| || ||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  39675780 cttcttcactttacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctac 39675879  T
Q  151 acctctccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatcttt 250  Q
    ||||||||| ||||||||| |||| |||||| ||||| ||||||||||||| |||| | |  |||||||||  ||||| || |||  |||||||||| ||    
T  39675880 acctctccatgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttctttggcgttgccttcatcctt 39675979  T
Q  251 cattacgatgatgatgaagacgaagttgtcgacatttctgc 291  Q
    ||||||||||| || ||||| |||||||  |||||| ||||    
T  39675980 cattacgatgaagaagaagatgaagttgctgacattgctgc 39676020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 53 - 246
Target Start/End: Original strand, 10045775 - 10045968
Alignment:
Q  53 tcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacac 152  Q
    |||||||| || |||||||||||  ||||||| ||||| |||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||| ||||    
T  10045775 tcttcactctacttaacaaacgcaattttcttcggtcttttcttctccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacac 10045874  T
Q  153 ctctccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcat 246  Q
    |||| || || |||||| ||||||||||||  | ||| ||||||||||| ||||||||  | |||||||| ||||| ||||||| || ||||||    
T  10045875 ctcttcatgttctcacaatctctgagattgccggtgttgtttccctcatagcttcctttatttaccttatggctttcttcggcattggcttcat 10045968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 359 - 495
Target Start/End: Original strand, 39676070 - 39676206
Alignment:
Q  359 aaagttatgtccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgtg 458  Q
    |||||| ||||||||||||| || |||||||| ||||| ||||| || ||||||||||| |||||||| ||||| || ||||| ||||||||||| ||||    
T  39676070 aaagttttgtccatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtg 39676169  T
Q  459 cagcaaagattaggaaccaagcagtggagagagttac 495  Q
    | ||   ||||||||||||||| ||||||||||||||    
T  39676170 ctgctgtgattaggaaccaagctgtggagagagttac 39676206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 498
Target Start/End: Original strand, 10046135 - 10046265
Alignment:
Q  368 tccatggaagacgaagaggttgtcggtgcggtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgtgcagcaaaga 467  Q
    ||||||||||| || ||||||||| ||||||||||| | ||  |||||||||| ||||| ||||| ||||| ||||||||||||   ||||| ||   ||    
T  10046135 tccatggaagatgacgaggttgtccgtgcggtggtaaccggtacaattccgtcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 10046234  T
Q  468 ttaggaaccaagcagtggagagagttaccgg 498  Q
    |  | |||||||| |||||||||||||||||    
T  10046235 tacgtaaccaagcggtggagagagttaccgg 10046265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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