View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16298_low_3 (Length: 292)

Name: NF16298_low_3
Description: NF16298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16298_low_3
NF16298_low_3
[»] chr2 (4 HSPs)
chr2 (42-279)||(28736864-28737101)
chr2 (42-279)||(28713590-28713827)
chr2 (42-232)||(28743490-28743680)
chr2 (42-234)||(28786419-28786611)
[»] chr8 (9 HSPs)
chr8 (120-212)||(10767260-10767352)
chr8 (167-212)||(2028085-2028130)
chr8 (167-212)||(2053868-2053913)
chr8 (167-211)||(1950866-1950910)
chr8 (167-214)||(2021930-2021977)
chr8 (167-212)||(2032621-2032666)
chr8 (167-212)||(2036676-2036721)
chr8 (167-212)||(2046053-2046098)
chr8 (167-209)||(2049865-2049907)
[»] chr4 (1 HSPs)
chr4 (158-212)||(48909118-48909172)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 42 - 279
Target Start/End: Original strand, 28736864 - 28737101
Alignment:
Q  42 ggatctttgccaatatttgctaagtctaaaataggaataatgtgttgtgtgttggttgaatttgtggactttgaaaacttatcaggtgggtgatgaaata 141  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  28736864 ggatctttgccaatatttgctaagtctataataggaataatgtgttgtgtgttggttgaatttgtggactttgaaaacttatcaggtggatggtgaaata 28736963  T
Q  142 aggtagggattttgagaataccatgatcaacaaggcctttaacaccagcttttgtttcatcaaatgctttgagatcctgcagcctatcagagttgaattt 241  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28736964 aggttgggattttgagaataccttgatcaacaaggcctttaacaccagcttttctttcatcaaatgctttgagatcctgcagcctatcagagttgaattt 28737063  T
Q  242 gaagttgccttcaatttcatctttagcagtaaacccca 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28737064 gaagttgccttcaatttcatctttagcagtaaacccca 28737101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 42 - 279
Target Start/End: Original strand, 28713590 - 28713827
Alignment:
Q  42 ggatctttgccaatatttgctaagtctaaaataggaataatgtgttgtgtgttggttgaatttgtggactttgaaaacttatcaggtgggtgatgaaata 141  Q
    ||||| ||| |||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||  | | ||||||||||| ||||||||||    
T  28713590 ggatccttgtcaatatttgcaaagtctataacaggaataatgtgttgtgtgttggttgaatttgtggcctttccatatttatcaggtggatgatgaaata 28713689  T
Q  142 aggtagggattttgagaataccatgatcaacaaggcctttaacaccagcttttgtttcatcaaatgctttgagatcctgcagcctatcagagttgaattt 241  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  28713690 aggtagggattttgagaataccttgatcaacaaggcctttaacaccagcttttgtttcatcaaatgctttgagctcttgtagcctatcagagttgaattt 28713789  T
Q  242 gaagttgccttcaatttcatctttagcagtaaacccca 279  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  28713790 gaagttgccttcaacttcatctgtagcagtaaacccca 28713827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 28743490 - 28743680
Alignment:
Q  42 ggatctttgccaatatttgctaagtctaaaataggaataatgtgttgtgtgttggttgaatttgtggactttgaaaacttatcaggtgggtgatgaaata 141  Q
    |||||||| |||||||||   ||||||| || |||||||||||||| ||||||||||||||||||||| ||   | | ||||||||||||||||||||||    
T  28743490 ggatctttaccaatatttagaaagtctataacaggaataatgtgttctgtgttggttgaatttgtggatttcccatatttatcaggtgggtgatgaaata 28743589  T
Q  142 aggtagggattttgagaataccatgatcaacaaggcctttaacaccagcttttgtttcatcaaatgctttgagatcctgcagcctatcaga 232  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||    
T  28743590 aggcagggattttgagaataccttgatcaacaaggcctttaacaccagcttttgtttcatcaaatgctttgagctcttgtagcctatcaga 28743680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 42 - 234
Target Start/End: Original strand, 28786419 - 28786611
Alignment:
Q  42 ggatctttgccaatatttgctaagtctaaaataggaataatgtgttgtgtgttggttgaatttgtggactttgaaaacttatcaggtgggtgatgaaata 141  Q
    ||||| || |||| |||||| ||||||| ||||||||||||||||||||| ||| |||||||||||| ||||  ||| |||||| ||||||| |||||||    
T  28786419 ggatcattaccaaaatttgcaaagtctataataggaataatgtgttgtgtattgtttgaatttgtggcctttccaaatttatcaagtgggtggtgaaata 28786518  T
Q  142 aggtagggattttgagaataccatgatcaacaaggcctttaacaccagcttttgtttcatcaaatgctttgagatcctgcagcctatcagagt 234  Q
    | || |||||||||| || ||| | ||||||||||||||||||||| | |||||| ||||||||||||||||| || |||||||||| |||||    
T  28786519 atgttgggattttgacaacacctttatcaacaaggcctttaacaccggtttttgtgtcatcaaatgctttgagctcatgcagcctattagagt 28786611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 10767352 - 10767260
Alignment:
Q  120 ttatcaggtgggtgatgaaataaggtagggattttgagaataccatgatcaacaaggcctttaacaccagcttttgtttcatcaaatgctttg 212  Q
    ||||||||| | ||||| |||||||||||||| |||  ||  ||   ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  10767352 ttatcaggttgatgatggaataaggtagggatcttgttaagtcctccatcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 10767260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 2028130 - 2028085
Alignment:
Q  167 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttg 212  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  2028130 atcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 2028085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 2053913 - 2053868
Alignment:
Q  167 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttg 212  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  2053913 atcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 2053868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 1950866 - 1950910
Alignment:
Q  167 atcaacaaggcctttaacaccagcttttgtttcatcaaatgcttt 211  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||    
T  1950866 atcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 1950910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 2021977 - 2021930
Alignment:
Q  167 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttgag 214  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  2021977 atcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgag 2021930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 2032666 - 2032621
Alignment:
Q  167 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttg 212  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||    
T  2032666 atcaacaagtccttttacaccagcttttgtttcatcaaattctttg 2032621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 2036721 - 2036676
Alignment:
Q  167 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttg 212  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  2036721 atcaacaagtcctttcacaccagattttgtttcatcaaatgctttg 2036676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 2046098 - 2046053
Alignment:
Q  167 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttg 212  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  2046098 atcaacaagtcctttcacaccagattttgtttcatcaaatgctttg 2046053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 2049907 - 2049865
Alignment:
Q  167 atcaacaaggcctttaacaccagcttttgtttcatcaaatgct 209  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||    
T  2049907 atcaacaagtccttttacacctgcttttgtttcatcaaatgct 2049865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 48909118 - 48909172
Alignment:
Q  158 aataccatgatcaacaaggcctttaacaccagcttttgtttcatcaaatgctttg 212  Q
    |||||| | ||||||||  ||||| |||| |||||||||||||||||||||||||    
T  48909118 aataccttcatcaacaaatccttttacactagcttttgtttcatcaaatgctttg 48909172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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