View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16298_low_4 (Length: 236)
Name: NF16298_low_4
Description: NF16298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16298_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 31996753 - 31996553
Alignment:
| Q |
19 |
caaaggtaaaaaaggaattttataaacaaatttaaaattcaagtcttttacagaaccagaaagaacaaccaatatttctcaaataatgtgccagctacat |
118 |
Q |
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| T |
31996753 |
caaaggtaaaaaaggaattttataaacaaatttaaaattcaagtcttttacagaaccagaaagaacaaccaatatttctcaaataatgtgccagctacat |
31996654 |
T |
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| Q |
119 |
gtcctacagtgcaagtccacatccacgaggcaatttcttggaactcgagtctccaacatccttgggatcgtaacagtggggggctatctccagcaaccac |
218 |
Q |
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| T |
31996653 |
gtcctacagtgcaagtccacatccacgaggcattttcttggaactcgagtctccaacatccttgggatcgtaacagtggggggctatctccagcaaccac |
31996554 |
T |
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| Q |
219 |
t |
219 |
Q |
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| T |
31996553 |
t |
31996553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 31997934 - 31997874
Alignment:
| Q |
128 |
tgcaagtccacatccacgaggcaatttcttggaactcgagtctccaacatccttgggatcg |
188 |
Q |
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| T |
31997934 |
tgcaagtccacgtccacgaggcattttcttggaactcgagtattcgacgtccttgggatcg |
31997874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 24011097 - 24011006
Alignment:
| Q |
128 |
tgcaagtccacatccacgaggcaatttcttggaactcgagtctccaacatccttgggatcgtaacagtggggggctatctccagcaaccact |
219 |
Q |
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| T |
24011097 |
tgcaagtccacttccacggggcattttcttggaactcaagtcttcaacatccttaggattgtaaaaattgggggctatctccagcaaccact |
24011006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 15843058 - 15843016
Alignment:
| Q |
128 |
tgcaagtccacatccacgaggcaatttcttggaactcgagtct |
170 |
Q |
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| T |
15843058 |
tgcaagtccacatccacgaggtattttcttcgaactcgagtct |
15843016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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