View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1629_high_5 (Length: 533)
Name: NF1629_high_5
Description: NF1629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1629_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 12 - 520
Target Start/End: Original strand, 14170139 - 14170645
Alignment:
| Q |
12 |
tcatcatctgtttatactttcatatatttaaccaacaagaaagttgagatcgatttgaaatggagaaggatgatacaatttcatagaagacggagggtcg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14170139 |
tcatcatctgtttatactttcatatatttaaccaacaagaaagttgagatcgatttgaaatggagaacgatgatacaatttcatagaagacggagggtcg |
14170238 |
T |
|
| Q |
112 |
tggtagtagacttcaaagcattggtgtggtcgggaaaaattttagggtggcaccgtgatgtgtgcaaaacgttcttgctaagaactctaacctagccaac |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14170239 |
tggtagtagacttcagagcattggtgtggtcgggaaaa-ttttagggtggcaccgtgatgggtgcaaaacgttcttgctaagaactctaacctagccaac |
14170337 |
T |
|
| Q |
212 |
gatgagccatttacaaggccttgttggttgtgtatgaggtaggacgattgtgaacgagattagggttagctactgacccttatatatagaaaatattttg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14170338 |
gatgagccatttacaaggccttgttggttgtgtatgaggtaggacgattgtgaacgagattatggttagctactgaaccttatatatagaaaatattttg |
14170437 |
T |
|
| Q |
312 |
cttccttgcttgctcgctcttaaatcttcccttaaggtcggctctgcattgctccccaagtcaggagcgtatagaacacaaatgattagttctttagatc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14170438 |
cttccttgcttgctcgctcttaaatcttcccttaaggtcggctctgcattgctccccaagtcaggagcgtatagaactcaaatgattagttctttagatc |
14170537 |
T |
|
| Q |
412 |
gccattgcacttaagtggcaatgagggtatcaattgagtacctagcctagtccaaaaacttttatataatttcgacatttctcgaggaatgtcatttaat |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14170538 |
gccattgcacttaagtggcaatgagggtatcaattgagtacctagcctagtccaaaaacttttatataatttcgaca-ttctcgaggaatgtcatttaat |
14170636 |
T |
|
| Q |
512 |
gttacatat |
520 |
Q |
| |
|
|||||||| |
|
|
| T |
14170637 |
attacatat |
14170645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University