View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1629_high_6 (Length: 479)
Name: NF1629_high_6
Description: NF1629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1629_high_6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 12 - 479
Target Start/End: Complemental strand, 36764430 - 36763963
Alignment:
| Q |
12 |
aacctgtgacaaaagaggcaatattgtgactcctgcatgacctcctacaactggaacatcaacgtctcttggatcaacaccaagtacctctgcctgcaag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764430 |
aacctgtgacaaaagaggcaatattgtgactcctgcatgacctcctacaactggaacatcaacgtctcttggatcaacaccaagtacctctgcctgcaag |
36764331 |
T |
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| Q |
112 |
agnnnnnnnnntacacaggcatttactcatacaatagtaggaaggaaattcaattatgagatagaagaggagagctatgcttaccacaaaagtatttgcc |
211 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764330 |
agaaaaaaaaatacacaggcatttactcatacaatagtaggaaggaaattcaattatgagatagaagaggagagctatgcttaccacaaaagtatttgcc |
36764231 |
T |
|
| Q |
212 |
ctcacaacatcgagggctgtaactcctaaaagtcgctttggatcatatgtaccagctttcttgaagacctcagcagcaattggcacagtggaattcactg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764230 |
ctcacaacatcgagggctgtaactcctaaaagtcgctttggatcatatgtaccagctttcttgaagacctcagcagcaattggcacagtggaattcactg |
36764131 |
T |
|
| Q |
312 |
gattgctaatcaagttgacaatcgcattggggcaacatttggcaattccttcgcaaagggttctcacaattccagcatttatcttaaataagtcgtccct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764130 |
gattgctaatcaagttgacaatcgcattggggcaacatttggcaattccttcgcaaagggttctcacaattccagcatttatcttaaataagtcgtccct |
36764031 |
T |
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| Q |
412 |
ggtcattccaggtttccttggcacaccagcaggtataactaccaagtccatgcctgtgagtgcattct |
479 |
Q |
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| T |
36764030 |
ggtcattccaggtttccttggcacaccagcaggtataactaccaagtccatgcctgtgagtgcattct |
36763963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 11657205 - 11657400
Alignment:
| Q |
12 |
aacctgtgacaaaagaggcaatattgtgactcctgcatgacctcctacaactggaacatcaacgtctcttggatcaacaccaagtacctctgcctgcaag |
111 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11657205 |
aacctgtgataaaagaggcaatattgtgactcctgcatgacctcctaccacaggaacatcaacttctcttggatcaacaccaagtacctctgcctgcaag |
11657304 |
T |
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| Q |
112 |
ag-nnnnnnnnntacacaggcatttactcatacaatagtaggaaggaaattcaattatgagatagaagaggagagctatgcttaccacaaaagtatt |
207 |
Q |
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| T |
11657305 |
agaaaaggaaagtacac-cgcatttactcatattatagtaagaaggaaattcagttatgagatagaagaggaaagctatgcttaccacaaaagtatt |
11657400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 50233272 - 50233467
Alignment:
| Q |
12 |
aacctgtgacaaaagaggcaatattgtgactcctgcatgacctcctacaactggaacatcaacgtctcttggatcaacaccaagtacctctgcctgcaag |
111 |
Q |
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||||| ||| ||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
50233272 |
aacctatgataaaagaggcaatattgtaactcctgcatgacctcctaccactggaacattaacttctcttggatcaacaccaagtacctctgcctgcaag |
50233371 |
T |
|
| Q |
112 |
ag-nnnnnnnnntacacaggcatttactcatacaatagtaggaaggaaattcaattatgagatagaagaggagagctatgcttaccacaaaagtatt |
207 |
Q |
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| T |
50233372 |
agaaaaggaaagtacgc-cgcatttactcatattatagtaggaaggaaattcaattatgagatagaagaggaaagctatgcttaccacgaaagtatt |
50233467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 7391640 - 7391445
Alignment:
| Q |
12 |
aacctgtgacaaaagaggcaatattgtgactcctgcatgacctcctacaactggaacatcaacgtctcttggatcaacaccaagtacctctgcctgcaag |
111 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7391640 |
aacctgtgataaaagaggcaatattgtgactcctgcatgacctcctaccacaggaacatcaacttctcttggatcaacaccaagtacctctgcctgcaag |
7391541 |
T |
|
| Q |
112 |
ag-nnnnnnnnntacacaggcatttactcatacaatagtaggaaggaaattcaattatgagatagaagaggagagctatgcttaccacaaaagtatt |
207 |
Q |
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| T |
7391540 |
agaaaaggaaagtacac-cgcatttactcatattatagtaagaaggaaattcaattatgagatagaagaggaaagctatgcttaccacaaaagtatt |
7391445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 19585472 - 19585667
Alignment:
| Q |
12 |
aacctgtgacaaaagaggcaatattgtgactcctgcatgacctcctacaactggaacatcaacgtctcttggatcaacaccaagtacctctgcctgcaag |
111 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19585472 |
aacctgtgataaaagaggcaatattgtgactcctgcatgacctcctaccacaggaacatcaacttctcttggatcaacaccaagtacctctgcctgcaag |
19585571 |
T |
|
| Q |
112 |
ag-nnnnnnnnntacacaggcatttactcatacaatagtaggaaggaaattcaattatgagatagaagaggagagctatgcttaccacaaaagtatt |
207 |
Q |
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|| ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19585572 |
agaaaaggaaagtacac-cgcatttactcatattatagtaagaaggaaattcaattatgagatagaagaggaaagctatgcttaccacaaaagtatt |
19585667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 4990674 - 4990777
Alignment:
| Q |
233 |
actcctaaaagtcgctttggatcatatgtaccagctttcttgaagacctcagcagcaattggcacagtggaattcactggattgctaatcaagttgacaa |
332 |
Q |
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||||| || |||| ||| |||||||| ||||||||| | ||||| |||||||| ||||| || |||||||| || ||||||||||| |||||||| |||| |
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| T |
4990674 |
actcccaacagtctcttgggatcataagtaccagctcttttgaaaacctcagccgcaataggaacagtggagttaactggattgcttatcaagtttacaa |
4990773 |
T |
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| Q |
333 |
tcgc |
336 |
Q |
| |
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|||| |
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| T |
4990774 |
tcgc |
4990777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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