View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1629_high_8 (Length: 318)
Name: NF1629_high_8
Description: NF1629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1629_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 36763946 - 36763629
Alignment:
| Q |
1 |
caaaaagccacgaacctagaaacccaaatacacttgaatcatttgaacatagtagaagctaaatattgttaaaacaacttgcacatccttaaaataaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
36763946 |
caaaaagccacgaacctagaaacccaaatacacttgaatcatttgaacatagtagaagctaaatattgttaaaacaactcgcatatccttaaaataaata |
36763847 |
T |
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| Q |
101 |
gtggcctgaacagaatccaggttgaaccaaagaaaaacacaactattactaaccactatgaattagcacaaccactactaagcgcgtgttcggaaactta |
200 |
Q |
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| T |
36763846 |
gtggcctgaacagaattcaggttgaaccaaagaaaaacacaattattactaaccactatgaattagcacagccactactaagcacgtgttcggaaactta |
36763747 |
T |
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| Q |
201 |
taaagtcacggtgtcaccgtgccattactgaagctgaaatatgttgcttcagtaaagtcacgttcaaagtgcataggaacatgagaaatgtcaaagcggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36763746 |
taaagtcacggtgtcaccgtgccattactgaagctgaaatttgttgcttcagtaaagtcacgttcaaagtgcataggaacatgagaaatgtcaacgcggc |
36763647 |
T |
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| Q |
301 |
acacaaccaaatatgatt |
318 |
Q |
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|||||||||||||||||| |
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| T |
36763646 |
acacaaccaaatatgatt |
36763629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 35038203 - 35038240
Alignment:
| Q |
242 |
tgttgcttcagtaaagtcacgttcaaagtgcataggaa |
279 |
Q |
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| T |
35038203 |
tgttgcttcagttaagtcacgttcaaagtgcataggaa |
35038240 |
T |
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