View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1629_low_1 (Length: 684)
Name: NF1629_low_1
Description: NF1629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1629_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 10 - 665
Target Start/End: Original strand, 19911441 - 19912096
Alignment:
| Q |
10 |
gacatcatcattggagccccttctgaagtctccacctctgttgctgcagcggcttctgccgcttcctgcgctgccactgcctcccttgctgaaagtgccc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911441 |
gacatcatcattggagccccttctgaagtctccacctctgttgctgcagcagcttctgccgcttcctgcgctgccactgcctcccttgctgaaagtgccc |
19911540 |
T |
|
| Q |
110 |
tcactgtcgctggtttcttgttgtcatcatcgtcgggataatcctcatcgaagttgtctctaaaagtcactacacgtcctcggtgaaacggctctgatga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911541 |
tcactgtcgctggtttcttgttgtcatcatcgtcgggatcatcctcatcgaagttgtctctaaaagtcactacacgtcctcggtgaaacggctctgatga |
19911640 |
T |
|
| Q |
210 |
cacattggtggaatttcttcgtgagagttgcggccggagatttcctccgccagaggagttttctggtgattcgaccgagagacgtgtggagatgcggcga |
309 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911641 |
cacattggtggaatttcttcgtgagagttgcgaccggagatttcctccgccagaggagttttctggtgattcgaccgagagacgtgtggagatgcggcga |
19911740 |
T |
|
| Q |
310 |
gtgaactgtggtctagtggccggaggattggactcctccgatgggtcaaggtcgtccccttggtgagtcatggattgggtggttgacatgtctgagtcat |
409 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911741 |
gtgaactgtggtctagtggccggaggattggactcctccgatgagtcagggtcgtccccttggtgagtcatggattgggtggttgacatgtctgagtcat |
19911840 |
T |
|
| Q |
410 |
cgtggtgagtttggattcggactgagttgcgacgaccgaattgagaaaaacttctactattaggattttggataggaatatctgaagttggaatatgaat |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911841 |
cgtggtgagtttggattcggactgagttgcgacgaccgaattgagaaaaacttctactattaggattttggataggaatatctgaagttggaatatgaat |
19911940 |
T |
|
| Q |
510 |
cgttgatgtccaagtagagccagtgcgtttgagtcgaatcttgtccttgaatgctttccaagatcttccaaatcagtgaaaatgaaactgtgagctaact |
609 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911941 |
cgttgatgtccaagcagagccagtgcgtttgagtcgaatcttgtccttgaatgctttccaagatcttccaaatcagtgaaaatgaaactgtgagctaact |
19912040 |
T |
|
| Q |
610 |
atttgagaaccatagtctttcctcgacaatgtaagaggacaatacacatatgtcat |
665 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19912041 |
atttgagaaccatagtctttcctcgacaatgtaagaggacaatacacatatgtcat |
19912096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 391 - 595
Target Start/End: Complemental strand, 29404987 - 29404786
Alignment:
| Q |
391 |
gttgacatgtctgagtcatcgtggtgagtttggattcggactgagttgcgacgaccgaattgagaaaaacttctactattaggattttggataggaatat |
490 |
Q |
| |
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||||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||| ||||| ||||| || || |||||||||||||| || | |
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| T |
29404987 |
gttgacatgtctgagtc---gtaatgagtttggactcgaactgagttgcgacgaccgaattgtgaaaagcttctgctgtttggattttggatagggatgt |
29404891 |
T |
|
| Q |
491 |
ctgaagttggaatatgaatcgttgatgtccaagtagagccagtgcgtttgagtcgaatcttgtccttgaatgctttccaagatcttccaaatcagtgaaa |
590 |
Q |
| |
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| || |||||||| |||| | ||||||||||| |||||||| || || || |||| |||||| || || |||||||||||||||||| |||| ||||| |
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| T |
29404890 |
cggatgttggaatgggaattgatgatgtccaagcagagccagcacgctttagccgaagcttgtctttaaaggctttccaagatcttccatatcaatgaaa |
29404791 |
T |
|
| Q |
591 |
atgaa |
595 |
Q |
| |
|
||||| |
|
|
| T |
29404790 |
atgaa |
29404786 |
T |
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