View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1629_low_10 (Length: 310)

Name: NF1629_low_10
Description: NF1629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1629_low_10
NF1629_low_10
[»] chr1 (1 HSPs)
chr1 (5-296)||(21151202-21151493)
[»] chr7 (14 HSPs)
chr7 (5-286)||(22888519-22888800)
chr7 (5-280)||(22830252-22830527)
chr7 (5-296)||(22808841-22809132)
chr7 (5-286)||(22804557-22804838)
chr7 (5-286)||(22814248-22814529)
chr7 (5-286)||(22893174-22893455)
chr7 (5-286)||(22879813-22880094)
chr7 (22-286)||(22875166-22875430)
chr7 (5-280)||(22839273-22839548)
chr7 (5-288)||(22825479-22825762)
chr7 (5-286)||(22897490-22897771)
chr7 (24-250)||(22912908-22913134)
chr7 (181-258)||(22857835-22857912)
chr7 (234-288)||(22885053-22885107)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 296
Target Start/End: Complemental strand, 21151493 - 21151202
Alignment:
5 tggttggttatatagaaagttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggaca 104  Q
    ||||||||| |||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||| |||    
21151493 tggttggttgtatagatagttgtctaaacttccatttggcatgtaatcataaaccaaaagtaactcgctttttcgcctgcaatagccataaagttgaaca 21151394  T
105 agattcctgtgccgaagacaaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaa 204  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21151393 agattcctgtgccgaagacgaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaa 21151294  T
205 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgtagtaaaatat 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
21151293 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgtagcaaaatat 21151202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 22888519 - 22888800
Alignment:
5 tggttggttatatagaaagttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggaca 104  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||    
22888519 tggttggttatatagatagttgtctaaacttccattcggcatgtaatcataaaccaaaagtaactcgctttttcgcctgcaatagccatgaagttgaaca 22888618  T
105 agattcctgtgccgaagacaaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaa 204  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
22888619 agattcctgtgccgaagacgaccgatactaacaatttccgacacaaattccctcatcccttgtcttgattcatgagacacccttttcacagcaacctcaa 22888718  T
205 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgt 286  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||    
22888719 gtttggaactttgtatcacacctttgtagactctaccaaatccaccaactcccaatagccccttttccctgaaaccctttgt 22888800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 280
Target Start/End: Original strand, 22830252 - 22830527
Alignment:
5 tggttggttatatagaaagttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggaca 104  Q
    |||||||||  ||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
22830252 tggttggttgaatagatagttgtctaaacttccattcggcatgtaatcataaaccaaaagtaactcgctttttcgcctgcaatagccataaagttggaca 22830351  T
105 agattcctgtgccgaagacaaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaa 204  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
22830352 agattcctgtgccgaagacgaccgatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttgaa 22830451  T
205 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaacc 280  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||| ||||||    
22830452 gtttggaacttggtatcacacctttgtagactttaccaaatccaccaactcccagtatccccttttccctgaaacc 22830527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 22808841 - 22809132
Alignment:
5 tggttggttatatagaaagttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggaca 104  Q
    |||||| || |||||| ||||||||||||||||||| | |||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||    
22808841 tggttgcttgtatagatagttgtctaaacttccatttggcatgtaatcataaaccaaaagtaactccctttttcgcctgcaatagccatgaagttgaaca 22808940  T
105 agattcctgtgccgaagacaaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaa 204  Q
    ||||||||||| ||||||| ||| ||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||    
22808941 agattcctgtgtcgaagacgaccgatactgacaatttccgacacaaattccctcatcccttgtcttgattcattagacacccttttcacagcaacctcaa 22809040  T
205 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgtagtaaaatat 296  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
22809041 gtttggaactttgtatcacacctttgtagactctaccaaatccaccaactcctagtagacccttttccccgaaaccttttgtagcaaaatat 22809132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 22804557 - 22804838
Alignment:
5 tggttggttatatagaaagttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggaca 104  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||| |||    
22804557 tggttggttgtatagatagttgtctaaacttccattcggcatgtaatcataaaccaaaagtaactcgctttttcgcctgcaatagccataaagttgaaca 22804656  T
105 agattcctgtgccgaagacaaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaa 204  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
22804657 agattcctgtgccgaagacgaccgatactaacaatttccgacacaaattccctcatcccttgtcttgattcatgagacacccttttcacagcaacctcaa 22804756  T
205 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgt 286  Q
    |||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |||||| |||||    
22804757 gtttggaacttggcatcacacctttgtatactctaccaaatccaccaactcccaatagccccttttccctgaaaccctttgt 22804838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 22814248 - 22814529
Alignment:
5 tggttggttatatagaaagttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggaca 104  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||| || |||    
22814248 tggttggttatatagatagttgtctaaacttccattcggcatgtaatcataaaccaaaagtaactcgctttttcgcctgcaatagccatgaagatgaaca 22814347  T
105 agattcctgtgccgaagacaaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaa 204  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||||| || || |||||||||||||||||||| ||||    
22814348 agattcctgtgccgaagacgaccgatactaacaatttccgacacaaattccctcatcccttgtcttgactcgtgtgacacccttttcacagcaacctcaa 22814447  T
205 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| || |||||    
22814448 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagccctttttccctgaacccctttgt 22814529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 22893174 - 22893455
Alignment:
5 tggttggttatatagaaagttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggaca 104  Q
    ||||||||| |||| | | ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||    
22893174 tggttggttgtataaatatttgtctaaacttccattcggcatgtaatcataaaccaaaagtaactcgctttttcgcctgcaatagccatgaagttgaaca 22893273  T
105 agattcctgtgccgaagacaaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaa 204  Q
    |||||||| |||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
22893274 agattcctctgccgaagacgaccgatactaacaatttccgacacaaattccctcatcccttgtcttgattcatgagacacccttttcacagcaacctcaa 22893373  T
205 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgt 286  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||    
22893374 gtttggaacttggtaacacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgt 22893455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 22879813 - 22880094
Alignment:
5 tggttggttatatagaaagttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggaca 104  Q
    |||||||||||||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| | |||    
22879813 tggttggttatatagatagttgtctaaacttccatttggcatgtaatcataaaccaaaagtaactcgctttttcgtctacaatagccatgaagtcgaaca 22879912  T
105 agattcctgtgccgaagacaaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaa 204  Q
    ||||||||||||| ||||| ||||||||| |||||||||  ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
22879913 agattcctgtgccaaagacgaccaatactgacaatttcccgcacaaattccctcatcccttgtcttgattcatgagacacccttttcacagcaacctcaa 22880012  T
205 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgt 286  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||    
22880013 gtttgaaacttggtatcacacctttgtagactctaccaaatccaccaactcccaggagccccttttccctgaaaccttttgt 22880094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 22875166 - 22875430
Alignment:
22 agttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggacaagattcctgtgccgaag 121  Q
    ||||||||||||||||||| | |||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| |||||    
22875166 agttgtctaaacttccatttggcatgtaatcataaaccaaaagtaactccctttttcgcctgcaatagccatgaagttgaacaagattcctgtgtcgaag 22875265  T
122 acaaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaagtttggaactcggtatc 221  Q
    || |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||    
22875266 acgaccaatactaacaatttccgacacaaattccctcatcccttgtcttgattcatgagacacccttttcacagcaacctcaagtttggaactttgtatc 22875365  T
222 acacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgt 286  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||    
22875366 acacctttgtagactctaccaaatccaccaactcccaatagccccttttccctgaaaccctttgt 22875430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 280
Target Start/End: Original strand, 22839273 - 22839548
Alignment:
5 tggttggttatatagaaagttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggaca 104  Q
    ||||| ||| |||| | ||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||    
22839273 tggttcgttgtataaatagttgtctaaacttccattcggcatgtaatcataaaccaaaagtaactcactttttcgcctgcaatagccatgaagttgaaca 22839372  T
105 agattcctgtgccgaagacaaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaa 204  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||    
22839373 agattcctgtgtcgaagacgaccgatactaacaatttccgacacaaattccctcatcccttgttttgattcattagacacccttttcacagcaacctcaa 22839472  T
205 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaacc 280  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
22839473 gtttggaacttggtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaacc 22839548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 22825479 - 22825762
Alignment:
5 tggttggttatatagaaagttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggaca 104  Q
    |||| |||||| |||| | ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||  |||| ||||||||||| |||    
22825479 tggtgggttatgtagataattgtctaaacttccattcggcatgtaatcataaatcaaaagtaactcgctttttcgcctgtaatagccatgaagttgaaca 22825578  T
105 agattcctgtgccgaagacaaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaa 204  Q
    |||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||    
22825579 agattcttgtgccgaagacgaccgatactaacaatttccgacacgaattccctcatcccttgtcttgattcatgagagacccttttcacagcaacctcaa 22825678  T
205 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgtag 288  Q
     ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||  | ||||||| |||||| |||||||    
22825679 ttttggaacttggtatgacacctttgtagactctaccaaatccaccaactcccagtagctcgttttccctgaaaccctttgtag 22825762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 22897490 - 22897771
Alignment:
5 tggttggttatatagaaagttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggaca 104  Q
    ||||||||| |||||| | ||||||| ||||||||| | |||||| ||||| |||| ||| ||||| | ||||||||| ||||| ||  ||||| | |||    
22897490 tggttggttgtatagataattgtctagacttccattaggcatgtaatcatagaccagaagcaactcaccttttcgcctgcaatagccgagaagtggaaca 22897589  T
105 agattcctgtgccgaagacaaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaa 204  Q
    |||||||| || ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| ||||    
22897590 agattcctatgacgaagacgaccgatactaacaatttccgacacgaattccctcatcccttgtcttgattcatgtgaaaccctcttcactgcaacctcaa 22897689  T
205 gtttggaactcggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgt 286  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||||| | |||||||||||||  |||||| |||||    
22897690 gtttggaacctggcatcacacctttgtagactctaccaaatccaccaactcctaatagacccttttccttgaaaccctttgt 22897771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 22912908 - 22913134
Alignment:
24 ttgtctaaacttccattcgacatgtagtcataaaccaaaagtaactcgctttttcgcctacaataaccatgaagttggacaagattcctgtgccgaagac 123  Q
    ||||||||||||||||||  |||||| || || || | ||||||||||| ||||||||| || || ||  ||||| | || ||||| || || |||||||    
22912908 ttgtctaaacttccattctgcatgtaatcgtagacaagaagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaagac 22913007  T
124 aaccaatactaacaatttccgacacgaattcccttatcccttgtcttgattcatgagacacccttttcacagcaacttcaagtttggaactcggtatcac 223  Q
     ||| ||||||||||||||||  ||||||||| | |||||||||||||||||||| || || || ||||| || || || ||||| ||| |||| |||||    
22913008 gacctatactaacaatttccgcgacgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcac 22913107  T
224 acctttgtagactctaccaaatccacc 250  Q
    |||||||||||||||||||||||||||    
22913108 acctttgtagactctaccaaatccacc 22913134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 22857835 - 22857912
Alignment:
181 acacccttttcacagcaacttcaagtttggaactcggtatcacacctttgtagactctaccaaatccaccaactccca 258  Q
    |||||||||||||| |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
22857835 acacccttttcacaacaacctcaagtttggaatttggtatcacacctttgtagactctaccaaatccaccaactccca 22857912  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 22885053 - 22885107
Alignment:
234 actctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgtag 288  Q
    ||||||||||||||||||||| ||| ||| |||||||||  |||||| |||||||    
22885053 actctaccaaatccaccaacttccaatagccccttttccatgaaaccctttgtag 22885107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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