View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1629_low_2 (Length: 576)
Name: NF1629_low_2
Description: NF1629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1629_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 17 - 563
Target Start/End: Original strand, 14170101 - 14170645
Alignment:
| Q |
17 |
agattttgagtttactggtgtatatctcgaactagtcctcatcatctgtttatactttcatatatttaaccaacaagaaagttgagatcgatttgaaatg |
116 |
Q |
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| T |
14170101 |
agattttgagtttactagtgtatatctcgaactagtcctcatcatctgtttatactttcatatatttaaccaacaagaaagttgagatcgatttgaaatg |
14170200 |
T |
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| Q |
117 |
gagaaggatgatacaatttcatagaagacggagggtcgtggtagtagacttcaaagcattggtgtggtcgggaaaaattttagggtggcaccgtgatgtg |
216 |
Q |
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| T |
14170201 |
gagaacgatgatacaatttcatagaagacggagggtcgtggtagtagacttcagagcattggtgtggtcgggaaaa-ttttagggtggcaccgtgatggg |
14170299 |
T |
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| Q |
217 |
tgcaaaacgttcttgctaagaactctaacctagccaacgatgagccatttacaaggccttgttggttgtgtatgaggtaggacgattgtgaacgagatta |
316 |
Q |
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| T |
14170300 |
tgcaaaacgttcttgctaagaactctaacctagccaacgatgagccatttacaaggccttgttggttgtgtatgaggtaggacgattgtgaacgagatta |
14170399 |
T |
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| Q |
317 |
gggttagctactgacccttatatatagaaaatattttgcttccttgcttgctcgctcttaaatcttcccttaaggtcggctctgcattgctccccaagtc |
416 |
Q |
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| T |
14170400 |
tggttagctactgaaccttatatatagaaaatattttgcttccttgcttgctcgctcttaaatcttcccttaaggtcggctctgcattgctccccaagtc |
14170499 |
T |
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| Q |
417 |
aggagcgtatagaacacaaatgattagttctttagatcgccattgcacttaagtggcaatgagggtatcaattgagtacctagcctagtccaaaaacttt |
516 |
Q |
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| T |
14170500 |
aggagcgtatagaactcaaatgattagttctttagatcgccattgcacttaagtggcaatgagggtatcaattgagtacctagcctagtccaaaaacttt |
14170599 |
T |
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| Q |
517 |
tatataatttcgacatttctcgaggaatgtcatttaatgttacatat |
563 |
Q |
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| T |
14170600 |
tatataatttcgaca-ttctcgaggaatgtcatttaatattacatat |
14170645 |
T |
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