View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1629_low_3 (Length: 575)
Name: NF1629_low_3
Description: NF1629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1629_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 32982743 - 32982331
Alignment:
| Q |
1 |
aaaaacataatgttttgttttacgttcttattatcttggtttttcattatatggttgtgagaataaattttattgaagttgtgttacattatgaatgttg |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32982743 |
aaaaacataatgttttattttacgttcttattatcttggtttttcattatatggttgtgagaataaattttattgaagttgtgtgacattatgaatgttg |
32982644 |
T |
|
| Q |
101 |
tccacataagtaaagcgaacatttctttcttcctttgaggatacctccaaactgttcaaagtgcataatactagtgacacagaaaatagttaatctttca |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32982643 |
tccacataagtaaagcgaccatttctttcttcctttgaggatacctccaaactgttcaaagtgcataatactagtgacacagaaaatagttaatctttca |
32982544 |
T |
|
| Q |
201 |
ttttagacaagattggttctaagattttttgtgtcctcagcaaatcaataaagttgtgtcattttaattattcgaatttttgtctttttgaatctttatt |
300 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
32982543 |
------acaagattggttctaagattttttgcgtccttgataaatcaataaagttgtattattttaattattcgaatttttgtctttttgaatctttatt |
32982450 |
T |
|
| Q |
301 |
gcaagagattcattagattatctaaaaata-nnnnnnncaatagaattaatcaaaatgagtt--nnnnnnnnnnntgtatattctcctaactaccaagta |
397 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
32982449 |
gcaagagattcattagattatctaaaaatattttttttcaatagaattaatcaaaatgagttaaaaaaaaatatatgtatactctcctaactaccaagta |
32982350 |
T |
|
| Q |
398 |
aaaataataattttagtga |
416 |
Q |
| |
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||||||||||||||||||| |
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| T |
32982349 |
aaaataataattttagtga |
32982331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 467 - 564
Target Start/End: Complemental strand, 32982325 - 32982228
Alignment:
| Q |
467 |
atcacccctaattttagttaatttttattaatcacaaagtactcatcatctttaataaactaatgacttagagttaagggttgtagtcccctaaaaaa |
564 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
32982325 |
atcacccctaattttagttaatttgcattaatcacaaagtactcatcatctttaataaactaatgacttagagttaaggtttgtagtcacctaaaaaa |
32982228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 3357941 - 3357908
Alignment:
| Q |
244 |
atcaataaagttgtgtcattttaattattcgaat |
277 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
3357941 |
atcaataaatttgtgtcattttaattattcgaat |
3357908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 19638336 - 19638398
Alignment:
| Q |
219 |
ctaagattttttgtgtcctcagcaaatcaataaagttgtgtcattttaattattcgaattttt |
281 |
Q |
| |
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||||||||||| |||| | ||||||||||||||||| |||| ||||||||||| |||||||| |
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|
| T |
19638336 |
ctaagatttttggtgtttttagcaaatcaataaagttatgtctttttaattatttgaattttt |
19638398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 6549623 - 6549680
Alignment:
| Q |
215 |
ggttctaagattttttgtgtcctcagcaaatcaataaagttgtgtcattttaattatt |
272 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||| | || ||||||||||| |
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| T |
6549623 |
ggttctaagattttttgtgtcttggccaaatcaataaagttatatctttttaattatt |
6549680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 33972258 - 33972206
Alignment:
| Q |
220 |
taagattttttgtgtcctcagcaaatcaataaagttgtgtcattttaattatt |
272 |
Q |
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||||||| ||| ||| || ||| |||||||||||||||||||||||||||||| |
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| T |
33972258 |
taagattatttatgttcttagcgaatcaataaagttgtgtcattttaattatt |
33972206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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