View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1629_low_4 (Length: 540)
Name: NF1629_low_4
Description: NF1629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1629_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 8e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 334 - 529
Target Start/End: Complemental strand, 52445330 - 52445143
Alignment:
| Q |
334 |
aaaaaatcaatgattcatactcatacgtatatattaactcatccaaatattcatttgtgaatatgtgcctttcattgatgactaatggagcagtgcaaag |
433 |
Q |
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| T |
52445330 |
aaaaaatcaatgattcatactcatacgtatatattaactcatccaaatattcatttgtgaatatgtgcctttcattgatgactaatggaacagtgcaaag |
52445231 |
T |
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| Q |
434 |
tgaaatatatatatgacgcgtaactaccaagaatgttaacaatactagtggattacggacaaggacatgttgcttatttatctcacaagaatgatg |
529 |
Q |
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| T |
52445230 |
tgaaat----atatgacgcgtaactaccaagaatgttaacaatactagtggattacggacaaggacatgttgc----ttatctcacaagaatgatg |
52445143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 52445559 - 52445448
Alignment:
| Q |
12 |
agcagcatcccttccaaaaagttcaatctccttccattgattgagattaaccgttcctgatctttggtaaaagcagaaaagtcactgtaaagcaatctga |
111 |
Q |
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| T |
52445559 |
agcagcatcccttccaaaaagttcaatttccttccattgattgagattaaccgttcctgatctttggtaaaagcagaaaagtcactgtaaagcaatctga |
52445460 |
T |
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| Q |
112 |
tccacttaacct |
123 |
Q |
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| T |
52445459 |
tccacttaacct |
52445448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 52445452 - 52445372
Alignment:
| Q |
197 |
aaccttcaaaattagaatacaagattcgagtgttaatttcaagagtgatttttgaatatttatatttaaaaactcgcatat |
277 |
Q |
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| T |
52445452 |
aaccttcaaaattagaatacaagattcgagtgttaatttcaagagtgatttttgaatatttatatttataaactcgcatat |
52445372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 17278431 - 17278382
Alignment:
| Q |
51 |
attgagattaaccgttcctgatctttggtaaaagcagaaaagtcactgta |
100 |
Q |
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| T |
17278431 |
attgagattaaccgttcttggtctttggtaaaaacagaaaaatcactgta |
17278382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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