View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1629_low_7 (Length: 339)
Name: NF1629_low_7
Description: NF1629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1629_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 28938731 - 28938410
Alignment:
| Q |
1 |
tgtttgtggttttggttatgctcgctcattttcatgcttgtgactcttttttatggttgattaaaggaattgccttaaaacctatcatgctaattgtgtt |
100 |
Q |
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| T |
28938731 |
tgtttgtggttttggttatgctcgctcattttcatgcttgtgactcttttttatggttgattaaaggaattgccttaaaacctatcatgctaattgtgtt |
28938632 |
T |
|
| Q |
101 |
ggccaagatgattcctttttgaagaatgacgattattggtgttgtggtaagtgctttaatctttatttttgcctttattatacgggccattcaaatacat |
200 |
Q |
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| T |
28938631 |
ggccaagatgattcctttctgaagaatgacgattattggtgttgtggtaagtgctttaatgtttatttttgcctttattat--gggccattcaaatacat |
28938534 |
T |
|
| Q |
201 |
ttactttaatatgttcttgtggtttatatttatgcatttgatactgccatgacaatccaccgtcttatatgtttctggaaaatatgatcttgcccgagtt |
300 |
Q |
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| T |
28938533 |
ttactttaatttgttcttgtggtatatatttatgcatttcatactgccatgacaatccaccgtcttatatgtttctggaaaatatgatcttgcccgagtt |
28938434 |
T |
|
| Q |
301 |
tttcttacaaatgcctctatatat |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
28938433 |
tttcttacaaatgcctctatatat |
28938410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 28904086 - 28903924
Alignment:
| Q |
45 |
tcttttttatggttgattaaaggaattgccttaaaacctatcatgctaattgtgttggccaagatgattcctttttgaagaatgacgattattggtgttg |
144 |
Q |
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| T |
28904086 |
tcttttttatggttgattacagggattgccttaaaacctatcatgctgaatgtgtaaaacaagatgcttcctttttgaagaatgacgataggtggtgttg |
28903987 |
T |
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| Q |
145 |
tggtaag-tgctttaatctttatttttgcctttattatacgggccattcaaatacatttacttta |
208 |
Q |
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| T |
28903986 |
tggtaagctgcttcaccgtttatttttgcctttattata--gggcattcaattacatttccttta |
28903924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 28927183 - 28927050
Alignment:
| Q |
45 |
tcttttttatggttgattaaaggaattgccttaaaacctatcatgctaattgtgttggccaagatgattcctttttgaagaatgacgattattggtgttg |
144 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||| || | || || |||| ||||||| || |||||||| || |||||||||| |
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| T |
28927183 |
tcttttttatggttgattaaagggattgccttaaaacctatcatgctaaatgcctgggtcatgatgcttcctttatggagaatgacaataattggtgttg |
28927084 |
T |
|
| Q |
145 |
tggtaag-tgctttaatctttatttttgccttta |
177 |
Q |
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| T |
28927083 |
tggtaagctgcttcatcttttatttttgccttta |
28927050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 28894119 - 28894012
Alignment:
| Q |
45 |
tcttttttatggttgattaaaggaattgccttaaaacctatcatgctaattgtgttggccaagatgattcctttttgaagaatgacgattattggtgttg |
144 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| | || | || |||||||||||||||||| ||||| ||| |||||||||| |
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| T |
28894119 |
tcttttttatggttgattacaggaattgccttaaaacctatcatgctgaatgcctggggaaagatgattcctttttgacaaatgatgataattggtgttg |
28894020 |
T |
|
| Q |
145 |
tggtaagt |
152 |
Q |
| |
|
|||||||| |
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|
| T |
28894019 |
tggtaagt |
28894012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 28927011 - 28926938
Alignment:
| Q |
228 |
atttatgcatttgatactgccatgacaatccaccgtcttatatgtttctggaaaatatgatcttgcccgagttt |
301 |
Q |
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||||||||||||||| | |||||||||| || |||| ||| ||||| ||||||||| |||||||||||||| |
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| T |
28927011 |
atttatgcatttgatcccaccatgacaattagccatcttgtatctttcttgaaaatatgctcttgcccgagttt |
28926938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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