View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16300_high_1 (Length: 535)
Name: NF16300_high_1
Description: NF16300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16300_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Complemental strand, 43411278 - 43410788
Alignment:
| Q |
19 |
atttagttgttattcagtagaaaatattatgaaaaatatgacatgtcattgaacgataaatacatatttatcaaat-tgactaaaatttcagtaaatttc |
117 |
Q |
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| T |
43411278 |
atttagttgttatttagtagaaaatattataaaaaatatgacatatcattgaacgatgaatacatatttatcaaatatgac--------------atgtc |
43411193 |
T |
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| Q |
118 |
actgaatcatgttgctaactactactatacatatgtttgataaaaatggtgcagattacttgagtacacatatgaaaatttttctggtgtattttgtcat |
217 |
Q |
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| T |
43411192 |
actgaatcatgttgctaactactactatacatatgtttgataaaaatggtgcagattacttgagtacacatatgaaaaattttctggtgtattttgtcat |
43411093 |
T |
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| Q |
218 |
caacagacagtccatggctatgcattgagctgtttggttaaggtattttatctctttggattgcaatcagaatcaacggacaatccatggccatgcattg |
317 |
Q |
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| T |
43411092 |
caacagacagtccatggctatgcattgagctgtttggttaaggtattttatctctttggattgtaatcagaatcaacggacaatccatggccatgcattg |
43410993 |
T |
|
| Q |
318 |
gattgtgatcataaaactaa--ttctctctttcacttatgcattttttcttaacatgtacaaaatgaacaaaaagctccgtaattatgtgacatagagag |
415 |
Q |
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| T |
43410992 |
gattgtgatcataaaactaattttctctcgttcacttatgcattttttcttaaaatgtacaaaatgaacaaaaagctcggtaattatgtgacatagagag |
43410893 |
T |
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| Q |
416 |
agagtaataattttcaatcaaatgtatgaaacgatgattacccgctcggtgtcccactggccaatgttatataatattggcatcccaatagtgcacaaat |
515 |
Q |
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| T |
43410892 |
agagtaataattttcaatcaaatgtatgaaacgatgattacccgctcggtgtctcaatggccaatgttatataatattgacatcccaataatgcacaaac |
43410793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 521
Target Start/End: Complemental strand, 34955117 - 34955069
Alignment:
| Q |
473 |
tggccaatgttatataatattggcatcccaatagtgcacaaatggtgtc |
521 |
Q |
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| T |
34955117 |
tggccaatgttatataacattggtatcccaatggtacacaagtggtgtc |
34955069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 521
Target Start/End: Complemental strand, 37811135 - 37811087
Alignment:
| Q |
473 |
tggccaatgttatataatattggcatcccaatagtgcacaaatggtgtc |
521 |
Q |
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| T |
37811135 |
tggccaatgttatataacattggtatcccaatggtacacaagtggtgtc |
37811087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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