View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16300_low_3 (Length: 239)
Name: NF16300_low_3
Description: NF16300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16300_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 23134898 - 23135127
Alignment:
| Q |
1 |
taaagggttaacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctttaggcacttgaaggatgcatctt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23134898 |
taaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatctt |
23134997 |
T |
|
| Q |
101 |
tggacagtagtggggcgtgactggttatttggaaggggtaggccagnnnnnnnnnctagttgttagatgattaagggcattgaacctgttattttttgtt |
200 |
Q |
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| T |
23134998 |
cggacagtaatggggcgtgactggttatttggaaggggtaggccag-ttttgtttctagttgttagatgattaagggcattgaacctgttattttttgtt |
23135096 |
T |
|
| Q |
201 |
gtaacggttttttggggatttatgatgatgt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23135097 |
gtaacggttttttggggatttatgatgatgt |
23135127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 11894982 - 11894753
Alignment:
| Q |
1 |
taaagggttaacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctttaggcacttgaaggatgcatctt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11894982 |
taaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatctt |
11894883 |
T |
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| Q |
101 |
tggacagtagtggggcgtgactggttatttggaaggggtaggccagnnnnnnnnnctagttgttagatgattaagggcattgaacctgttattttttgtt |
200 |
Q |
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| T |
11894882 |
cggacagtaatggggcgtgactggttatttggaaggggtaggccag-ttttgtttctagttgttagatgattaagggcattgaacctgttattttttgtt |
11894784 |
T |
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| Q |
201 |
gtaacggttttttggggatttatgatgatgt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
11894783 |
gtaacggttttttggggatttatgatgatgt |
11894753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 20282683 - 20282454
Alignment:
| Q |
1 |
taaagggttaacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctttaggcacttgaaggatgcatctt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |
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| T |
20282683 |
taaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctacgatgtttcgtgtctttgggcacttgaaggatgcatctc |
20282584 |
T |
|
| Q |
101 |
tggacagtagtggggcgtgactggttatttggaaggggtaggccagnnnnnnnnnctagttgttagatgattaagggcattgaacctgttattttttgtt |
200 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282583 |
tggacaataatggggcgtgactggttatttggaaggggtaggccag-ttttgtttctagttgttagatgattaagggcattgaacctgttattttttgtt |
20282485 |
T |
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| Q |
201 |
gtaacggttttttggggatttatgatgatgt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
20282484 |
gtaacggttttttggggatttatgatgatgt |
20282454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 14655999 - 14656113
Alignment:
| Q |
1 |
taaagggttaacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctttaggcacttgaaggatgcatctt |
100 |
Q |
| |
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||||||||| || |||||||||||||| | || |||||||||| ||| |||||| ||||||||||| ||||||||||| |||||| || ||| | || |
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| T |
14655999 |
taaagggttgacatgggagaagtcaaaaatcggctcatcagtggtgatgtcgtcatgcctgcgacgttttgtgtctttaggaacttgatgggtgcgtgtt |
14656098 |
T |
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| Q |
101 |
tggacagtagtgggg |
115 |
Q |
| |
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||| ||||||||||| |
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| T |
14656099 |
tggtcagtagtgggg |
14656113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 14656174 - 14656230
Alignment:
| Q |
171 |
ttaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatg |
227 |
Q |
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|||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||| |
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| T |
14656174 |
ttaagggcattgaatttgttaattttttatgtaacggttttttgtggatttatgatg |
14656230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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