View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16301_high_2 (Length: 361)
Name: NF16301_high_2
Description: NF16301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16301_high_2 |
 | |
|
| [»] scaffold0697 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 13340693 - 13341043
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340693 |
cataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgtacctt |
13340792 |
T |
|
| Q |
101 |
gaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340793 |
gaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
13340892 |
T |
|
| Q |
201 |
atctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340893 |
atctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtg |
13340992 |
T |
|
| Q |
301 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340993 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
13341043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 13330030 - 13330128
Alignment:
| Q |
253 |
ctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13330030 |
ctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
13330128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 5670226 - 5670576
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670226 |
cataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgtacctt |
5670325 |
T |
|
| Q |
101 |
gaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670326 |
gaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
5670425 |
T |
|
| Q |
201 |
atctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtg |
300 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670426 |
atctggcgagcatatacctaacatatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtg |
5670525 |
T |
|
| Q |
301 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670526 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
5670576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 10639514 - 10639164
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| ||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
10639514 |
cataaataataataccctatcataaataaaactgaagttaaaacccataaactatgcaagacatattttatttttatattaatttatactattgtacctt |
10639415 |
T |
|
| Q |
101 |
gaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10639414 |
gaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
10639315 |
T |
|
| Q |
201 |
atctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtg |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
10639314 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagtg |
10639215 |
T |
|
| Q |
301 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10639214 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
10639164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 32716097 - 32716447
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| | ||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
32716097 |
cataaataataataccctatcataaataaaactgaagttaaaacccataaactatgcaagacgtattttatttttatattaatttatactattgtacctt |
32716196 |
T |
|
| Q |
101 |
gaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
32716197 |
gaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggtaaaacataaatgaattgtaa |
32716296 |
T |
|
| Q |
201 |
atctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtg |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
32716297 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagtg |
32716396 |
T |
|
| Q |
301 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32716397 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
32716447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 26663315 - 26662965
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| ||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
26663315 |
cataaataataataccctatcataaataaacctgaagttaaaatccataaactatgcaagacatattttatttttatattaatttatactattgtacctt |
26663216 |
T |
|
| Q |
101 |
gaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26663215 |
gaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
26663116 |
T |
|
| Q |
201 |
atctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtg |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
26663115 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccagcacattgaccttgatgtaagtg |
26663016 |
T |
|
| Q |
301 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26663015 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
26662965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 22903574 - 22903224
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| | ||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
22903574 |
cataaataataataccctatcataaataaaactgaagttaaaacccataaactatgcaagacgtattttatttttatattaatttatactattgtacctt |
22903475 |
T |
|
| Q |
101 |
gaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22903474 |
gaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
22903375 |
T |
|
| Q |
201 |
atctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtg |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
22903374 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagtg |
22903275 |
T |
|
| Q |
301 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22903274 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
22903224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 34149374 - 34149051
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaatagttaaaatc-tataaactatgcaagacatgttttattttaatattaatctatgctat-tgtacc |
98 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | | ||| || |||||| |||| |||||||||| ||| |||| || ||| |||| | | | |||| |
|
|
| T |
34149374 |
cataaataataataccctatcacaaataaaattaaaattattttcctataaa-tatgtaagacatgttctatattaacatgaatttatgttgtgtatacc |
34149276 |
T |
|
| Q |
99 |
ttgaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgt |
198 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||||||| ||| ||||||||||| ||||||||||| || ||||| |||||||| |||||||| ||||| |
|
|
| T |
34149275 |
ttgaggaacccttaacccatttgttcgagaaatagcatttctgaggactctagaatcagcagctgaaccttcccacccaggcaacacatatataaattgc |
34149176 |
T |
|
| Q |
199 |
aaatctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtagg |
298 |
Q |
| |
|
| |||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||| |||||||||||||||||||| | |
|
|
| T |
34149175 |
atatctggtgagcatacacccaacacgtttgttgctatctcacccttccttgttctgaatctagttttgtcagcttcgggcacattgaccttgatgtaag |
34149076 |
T |
|
| Q |
299 |
tgccatcaagagctcctaaacaatt |
323 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34149075 |
tgccatcaagagctcctaaacaatt |
34149051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 208 - 351
Target Start/End: Original strand, 5537 - 5680
Alignment:
| Q |
208 |
gagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtgccatcaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |
|
|
| T |
5537 |
gagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttctggcacaatgaccttgatgtaagtgccatcaa |
5636 |
T |
|
| Q |
308 |
gagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5637 |
gagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
5680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 5377 - 5529
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaatagttaaaa-tctataaactatgcaagacatgttttattttaatattaatctatgctattgtacct |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | |||||||| || |||||||||||||||||| ||||||||| |||||||| ||| |||||||| || |
|
|
| T |
5377 |
cataaataataataccctgtcataaataaacctgaagttaaaaatccataaactatgcaagacatattttatttttatattaatttatactattgtatct |
5476 |
T |
|
| Q |
100 |
tgaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctaga |
152 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5477 |
tgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctaga |
5529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 48943430 - 48943486
Alignment:
| Q |
267 |
gtcagcttcaggcacattgaccttgatgtaggtgccatcaagagctcctaaacaatt |
323 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48943430 |
gtcagcttcgggcacattgaccttgatgtaagtgccatcaagagctcctaaacaatt |
48943486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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