View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16302_high_4 (Length: 279)

Name: NF16302_high_4
Description: NF16302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16302_high_4
NF16302_high_4
[»] chr6 (3 HSPs)
chr6 (1-279)||(21015713-21015991)
chr6 (89-138)||(21979678-21979727)
chr6 (90-138)||(14197704-14197752)
[»] chr4 (30 HSPs)
chr4 (4-232)||(49048519-49048749)
chr4 (7-276)||(49044089-49044358)
chr4 (7-253)||(48852576-48852822)
chr4 (8-110)||(48891326-48891428)
chr4 (8-57)||(48156530-48156579)
chr4 (2-55)||(48170694-48170747)
chr4 (5-57)||(48898630-48898682)
chr4 (184-231)||(48891499-48891546)
chr4 (184-242)||(48147647-48147705)
chr4 (1-54)||(37827109-37827162)
chr4 (2-54)||(48870450-48870502)
chr4 (2-54)||(48875754-48875806)
chr4 (2-54)||(48886136-48886188)
chr4 (2-57)||(45372181-45372236)
chr4 (7-54)||(45384983-45385030)
chr4 (89-138)||(50250821-50250870)
chr4 (5-53)||(33133930-33133978)
chr4 (94-138)||(45384908-45384952)
chr4 (2-50)||(48705478-48705526)
chr4 (1-57)||(48863136-48863192)
chr4 (8-47)||(50672412-50672451)
chr4 (184-242)||(45372005-45372063)
chr4 (3-57)||(47207805-47207859)
chr4 (8-54)||(48902852-48902898)
chr4 (2-52)||(50250907-50250957)
chr4 (1-54)||(7877633-7877686)
chr4 (185-242)||(7877816-7877873)
chr4 (4-57)||(49041267-49041320)
chr4 (184-232)||(37826940-37826988)
chr4 (94-134)||(45366250-45366290)
[»] chr3 (5 HSPs)
chr3 (1-54)||(47452022-47452075)
chr3 (1-47)||(11015641-11015687)
chr3 (165-231)||(47451854-47451920)
chr3 (84-137)||(11005994-11006047)
chr3 (84-137)||(11024569-11024622)
[»] chr7 (2 HSPs)
chr7 (8-54)||(48883712-48883758)
chr7 (184-226)||(48883891-48883933)
[»] chr8 (6 HSPs)
chr8 (1-54)||(12200211-12200264)
chr8 (1-54)||(12444639-12444692)
chr8 (7-55)||(4032024-4032072)
chr8 (171-224)||(12200381-12200434)
chr8 (171-224)||(12444809-12444862)
chr8 (86-138)||(4031941-4031993)
[»] chr5 (3 HSPs)
chr5 (2-55)||(42562445-42562498)
chr5 (92-138)||(42562380-42562426)
chr5 (188-229)||(179122-179163)
[»] chr1 (2 HSPs)
chr1 (94-148)||(24352770-24352824)
chr1 (94-138)||(24340405-24340449)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 21015713 - 21015991
Alignment:
Q  1 atctacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaatagttcatatttaggtgtcaattataaatgttatctatatggtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21015713 atctacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaatagttcatatttaggtgtcaattatatatgttatctatatggtt 21015812  T
Q  101 ttgggtatgacccatcaacaaatgattatttggtggttgtagtttcatgtgacacagacttccataatttttcatcaaagttagagtttttctcgttgag 200  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21015813 ttgggtatgacccatcaacagatgattatttggtggtggtagtttcatgtgacacagacttccataatttttcatcacagttagagtttttctcgttgag 21015912  T
Q  201 agataataggtggaaagaaattgagggtactcccttctcttacatgaatgcctgtgattattctatggtagggtcggtt 279  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||    
T  21015913 agataataggtggaaagaaattgagggtactcccttcccttacatgaatacctctgattattccatggtagggtcggtt 21015991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 21979727 - 21979678
Alignment:
Q  89 atctatatggttttgggtatgacccatcaacaaatgattatttggtggtt 138  Q
    |||||||||||||||| |||||||  |||| ||||||||| |||||||||    
T  21979727 atctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 14197752 - 14197704
Alignment:
Q  90 tctatatggttttgggtatgacccatcaacaaatgattatttggtggtt 138  Q
    ||||||||| |||||||||||||  ||||| |||||||| |||||||||    
T  14197752 tctatatggctttgggtatgacctgtcaaccaatgattacttggtggtt 14197704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 49048749 - 49048519
Alignment:
Q  4 tacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaatagttcatatttag--gtgtcaattataaatgttatctatatggttt 101  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |   ||||| |  ||      ||||||||||||||    
T  49048749 tacctttggaatccatccactagagttcacagacaaatacctttgtctccttatagttcatattcacacgtgtccaccatttcatatatctatatggttt 49048650  T
Q  102 tgggtatgacccatcaacaaatgattatttggtggttgtagtttcatgtgacacagacttccataatttttcatcaaagttagagtttttctcgttgaga 201  Q
    ||||||||||||||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||||||||| | || ||||||||||||||||||    
T  49048649 tgggtatgacccatcaacagatgattatttggtggttgtattgtcatttgacacagacttccataatttttcatcacatttggagtttttctcgttgaga 49048550  T
Q  202 gataataggtggaaagaaattgagggtactc 232  Q
    |||||||  ||||||||||||||||||||||    
T  49048549 gataatatatggaaagaaattgagggtactc 49048519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 49044358 - 49044089
Alignment:
Q  7 ctatggaatccatccactagagttcacaaacaaatacctttgtctcctaatagttcatatttaggtgtcaattataaatgttatctatatggttttgggt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||   |||||| ||   |   |||||||| |||||||||    
T  49044358 ctatggaatccatccactagagttcacaaacaaatacctttgtctccttatggttcctatttacaagtcaatcattccttacatctatattgttttgggt 49044259  T
Q  107 atgacccatcaacaaatgattatttggtggttgtagtttcatgtgacacagacttccataatttttcatcaaagttagagtttttctcgttgagagataa 206  Q
    |||| || |||||| ||||||||||||||||| |  | |||| | |||  | |||||||||| |||||| | | || ||||||||||| |||||||||||    
T  49044258 atgatccgtcaacagatgattatttggtggttttgatgtcatttcacaatgtcttccataatatttcattacatttggagtttttctcattgagagataa 49044159  T
Q  207 taggtggaaagaaattgagggtactcccttctcttacatgaatgcctgtgattattctatggtagggtcg 276  Q
    ||| ||||| |||||||||| ||||  |||| |||| || ||   || ||||||||| ||||||||||||    
T  49044158 tagatggaatgaaattgaggttactaacttcccttatataaacttctctgattattccatggtagggtcg 49044089  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 48852576 - 48852822
Alignment:
Q  7 ctatggaatccatccactagagttcacaaacaaatacctttgtctcctaatagttcatatttaggtgtcaattataaatgttatctatatggttttgggt 106  Q
    |||||||||||||||||  |||||||||||||||||||||||||||| | |  |||    |||| || ||  |||   ||||||||||||||||||||||    
T  48852576 ctatggaatccatccaccggagttcacaaacaaatacctttgtctcccattgattcgaggttagatggcacatatttctgttatctatatggttttgggt 48852675  T
Q  107 atgacccatcaacaaatgattatttggtggttgtagtttcatgtgacacagacttccataatttttcatcaaagttagagtttttctcgttgagagataa 206  Q
    ||||||| |||||  ||||||| ||||| ||| || | || | ||| |||  |||   |||| |||||||| | |||||||||||||| ||||||| |||    
T  48852676 atgacccgtcaaccgatgattacttggtagttttaatgtcctatgatacaaccttagctaatgtttcatcacatttagagtttttctcattgagagctaa 48852775  T
Q  207 taggtggaaagaaattgagggtactcccttctcttacatgaatgcct 253  Q
    |   |||||||||||||||||||||| |||| |||||||||||||||    
T  48852776 tgcatggaaagaaattgagggtactcacttcccttacatgaatgcct 48852822  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 48891326 - 48891428
Alignment:
Q  8 tatggaatccatccactagagttcacaaacaaatacctttgtctcctaatagttcatatttaggtgtcaattataaatgttatctatatggttttgggta 107  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||| |  |||    |||| || ||| |||  ||||||||||||||||||| ||||    
T  48891326 tatggaatccatccactggacttcacaaacaaatacctttgtctcctattgattcgaggttagatgccaactatttatgttatctatatggttttaggta 48891425  T
Q  108 tga 110  Q
    |||    
T  48891426 tga 48891428  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 48156579 - 48156530
Alignment:
Q  8 tatggaatccatccactagagttcacaaacaaatacctttgtctcctaat 57  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  48156579 tatggaatccatcaactagagtttacaaacaaatacctttgtctcctaat 48156530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 48170747 - 48170694
Alignment:
Q  2 tctacctatggaatccatccactagagttcacaaacaaatacctttgtctccta 55  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  48170747 tctacctatggaatccatccacccgagttcataaacaaatacctttgtctccta 48170694  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 48898630 - 48898682
Alignment:
Q  5 acctatggaatccatccactagagttcacaaacaaatacctttgtctcctaat 57  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  48898630 acctatggaatccatccaccggagctcacaaacaaatacctttgtctcctaat 48898682  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 48891499 - 48891546
Alignment:
Q  184 gagtttttctcgttgagagataataggtggaaagaaattgagggtact 231  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  48891499 gagtttttctcattgagagataatatgtggaaagaaattgagggtact 48891546  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 48147705 - 48147647
Alignment:
Q  184 gagtttttctcgttgagagataataggtggaaagaaattgagggtactcccttctctta 242  Q
    |||||||||||||||||||||| || |||||||||| ||||||||||||| ||| ||||    
T  48147705 gagtttttctcgttgagagatagtatgtggaaagaacttgagggtactccgttccctta 48147647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37827162 - 37827109
Alignment:
Q  1 atctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct 54  Q
    |||||| ||||||||||||||||| || |||||||||||||||| |||||||||    
T  37827162 atctacatatggaatccatccactggatttcacaaacaaatacccttgtctcct 37827109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 48870450 - 48870502
Alignment:
Q  2 tctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct 54  Q
    ||||||||||||||||||||||  || ||||||||||||||||||||| ||||    
T  48870450 tctacctatggaatccatccaccggatttcacaaacaaatacctttgtgtcct 48870502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 48875754 - 48875806
Alignment:
Q  2 tctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct 54  Q
    ||||||||||||||||||||||  || ||||||||||||||||| ||||||||    
T  48875754 tctacctatggaatccatccaccggatttcacaaacaaatacctatgtctcct 48875806  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 48886136 - 48886188
Alignment:
Q  2 tctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct 54  Q
    ||||||||||||||||||||||  || ||||||||||||||||||||| ||||    
T  48886136 tctacctatggaatccatccaccggatttcacaaacaaatacctttgtgtcct 48886188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 45372236 - 45372181
Alignment:
Q  2 tctacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaat 57  Q
    |||| |||||||||||||||||| | ||||| |||||||||||||| |||||||||    
T  45372236 tctatctatggaatccatccactggtgttcagaaacaaatacctttttctcctaat 45372181  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 45385030 - 45384983
Alignment:
Q  7 ctatggaatccatccactagagttcacaaacaaatacctttgtctcct 54  Q
    ||||||||||||| || ||||||||||||| |||||||||||||||||    
T  45385030 ctatggaatccattcattagagttcacaaagaaatacctttgtctcct 45384983  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 50250870 - 50250821
Alignment:
Q  89 atctatatggttttgggtatgacccatcaacaaatgattatttggtggtt 138  Q
    |||||||||||||||| |||||||  |||||| |||||||||||||||||    
T  50250870 atctatatggttttggttatgaccactcaacagatgattatttggtggtt 50250821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 33133978 - 33133930
Alignment:
Q  5 acctatggaatccatccactagagttcacaaacaaatacctttgtctcc 53  Q
    ||||||||||||||| |||  ||||||| ||||||||||||||||||||    
T  33133978 acctatggaatccattcacccgagttcataaacaaatacctttgtctcc 33133930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 45384952 - 45384908
Alignment:
Q  94 tatggttttgggtatgacccatcaacaaatgattatttggtggtt 138  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||    
T  45384952 tatggttttgggtatgatcagtcaacaaatgattatttggtggtt 45384908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 48705526 - 48705478
Alignment:
Q  2 tctacctatggaatccatccactagagttcacaaacaaatacctttgtc 50  Q
    ||||||| ||||||||||| ||| || ||||||||||||||||||||||    
T  48705526 tctacctgtggaatccatctactggatttcacaaacaaatacctttgtc 48705478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 48863136 - 48863192
Alignment:
Q  1 atctacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaat 57  Q
    |||||||||||||||||||||||  ||| ||| ||||||||||||| | ||||||||    
T  48863136 atctacctatggaatccatccaccggagctcagaaacaaataccttcgcctcctaat 48863192  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 50672412 - 50672451
Alignment:
Q  8 tatggaatccatccactagagttcacaaacaaataccttt 47  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaataccttt 50672451  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 45372063 - 45372005
Alignment:
Q  184 gagtttttctcgttgagagataataggtggaaagaaattgagggtactcccttctctta 242  Q
    ||||||||||| |||||||||||||  |||| |||| |||||||||||| |||| ||||    
T  45372063 gagtttttctcattgagagataatacttggagagaacttgagggtactcacttccctta 45372005  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 47207805 - 47207859
Alignment:
Q  3 ctacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaat 57  Q
    |||||||||||||||||||||| ||||| | | |||||||||| | |||||||||    
T  47207805 ctacctatggaatccatccactggagttgagagacaaatacctctctctcctaat 47207859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 48902852 - 48902898
Alignment:
Q  8 tatggaatccatccactagagttcacaaacaaatacctttgtctcct 54  Q
    |||||||||| |||||| || ||||||||| ||||||||||||||||    
T  48902852 tatggaatccttccactggatttcacaaacgaatacctttgtctcct 48902898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 50250957 - 50250907
Alignment:
Q  2 tctacctatggaatccatccactagagttcacaaacaaatacctttgtctc 52  Q
    ||||||||||||||||||||||  |  |||||| |||||||||||||||||    
T  50250957 tctacctatggaatccatccaccgggcttcacatacaaatacctttgtctc 50250907  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7877633 - 7877686
Alignment:
Q  1 atctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct 54  Q
    |||||| ||||||||||||||||| || || | |||||||||||| ||||||||    
T  7877633 atctacatatggaatccatccactggatttaaaaaacaaatacctgtgtctcct 7877686  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 7877816 - 7877873
Alignment:
Q  185 agtttttctcgttgagagataataggtggaaagaaattgagggtactcccttctctta 242  Q
    |||||||||| || ||||||||||  |||||||||| |||| ||||||||||| ||||    
T  7877816 agtttttctcatttagagataatacatggaaagaaactgagagtactcccttccctta 7877873  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 49041320 - 49041267
Alignment:
Q  4 tacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaat 57  Q
    ||||||||||| ||||||||  ||| |||||||| |||||||||| ||||||||    
T  49041320 tacctatggaacccatccaccggagctcacaaactaatacctttgcctcctaat 49041267  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 37826988 - 37826940
Alignment:
Q  184 gagtttttctcgttgagagataataggtggaaagaaattgagggtactc 232  Q
    |||||||||||||||| |||||||   |||| |||||||||||||||||    
T  37826988 gagtttttctcgttgaaagataattcatggagagaaattgagggtactc 37826940  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 45366290 - 45366250
Alignment:
Q  94 tatggttttgggtatgacccatcaacaaatgattatttggt 134  Q
    ||||||||| |||||||||||| |||| |||||||||||||    
T  45366290 tatggtttttggtatgacccattaacagatgattatttggt 45366250  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 47452075 - 47452022
Alignment:
Q  1 atctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct 54  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  47452075 atctacatatggaatccatccactggagttcacaaacaaatacctttgcctcct 47452022  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11015687 - 11015641
Alignment:
Q  1 atctacctatggaatccatccactagagttcacaaacaaataccttt 47  Q
    |||||||||||||||||||| ||| ||  ||||||||||||||||||    
T  11015687 atctacctatggaatccatcaactggacatcacaaacaaataccttt 11015641  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 47451920 - 47451854
Alignment:
Q  165 taatttttcatcaaagttagagtttttctcgttgagagataataggtggaaagaaattgagggtact 231  Q
    |||||||| |||| | ||||||||||| |||||||||| ||||   ||||||||||||||| |||||    
T  47451920 taattttttatcacacttagagtttttttcgttgagagctaatgcatggaaagaaattgagtgtact 47451854  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 11006047 - 11005994
Alignment:
Q  84 atgttatctatatggttttgggtatgacccatcaacaaatgattatttggtggt 137  Q
    ||||| |||||||||||||||||||||||  |||| | ||||||| ||||||||    
T  11006047 atgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggt 11005994  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 11024622 - 11024569
Alignment:
Q  84 atgttatctatatggttttgggtatgacccatcaacaaatgattatttggtggt 137  Q
    ||||| |||||||||||||||||||||||  |||| | ||||||| ||||||||    
T  11024622 atgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggt 11024569  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 48883712 - 48883758
Alignment:
Q  8 tatggaatccatccactagagttcacaaacaaatacctttgtctcct 54  Q
    |||||||||||| |||| || ||||||||||||||||||||||||||    
T  48883712 tatggaatccatacactggatttcacaaacaaatacctttgtctcct 48883758  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 48883891 - 48883933
Alignment:
Q  184 gagtttttctcgttgagagataataggtggaaagaaattgagg 226  Q
    |||| |||||| ||||||||||||| |||||||||||||||||    
T  48883891 gagtgtttctcattgagagataatatgtggaaagaaattgagg 48883933  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12200211 - 12200264
Alignment:
Q  1 atctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct 54  Q
    |||||| |||||||||||||| ||||  |||||||| |||||||||||||||||    
T  12200211 atctacgtatggaatccatcctctaggtttcacaaaaaaatacctttgtctcct 12200264  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12444639 - 12444692
Alignment:
Q  1 atctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct 54  Q
    |||||| |||||||||||||| ||||  |||||||| |||||||||||||||||    
T  12444639 atctacgtatggaatccatcctctaggtttcacaaaaaaatacctttgtctcct 12444692  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 4032072 - 4032024
Alignment:
Q  7 ctatggaatccatccactagagttcacaaacaaatacctttgtctccta 55  Q
    ||||||||| |||||| | |||||||||||||||||||||| |||||||    
T  4032072 ctatggaattcatccattggagttcacaaacaaatacctttatctccta 4032024  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 12200381 - 12200434
Alignment:
Q  171 ttcatcaaagttagagtttttctcgttgagagataataggtggaaagaaattga 224  Q
    |||||||||||| || |||||||| ||||||||||| | |||||| ||||||||    
T  12200381 ttcatcaaagttggaatttttctcattgagagataacaagtggaatgaaattga 12200434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 12444809 - 12444862
Alignment:
Q  171 ttcatcaaagttagagtttttctcgttgagagataataggtggaaagaaattga 224  Q
    |||||||||||| || |||||||| ||||||||||| | |||||| ||||||||    
T  12444809 ttcatcaaagttggaatttttctcattgagagataacaagtggaatgaaattga 12444862  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 4031993 - 4031941
Alignment:
Q  86 gttatctatatggttttgggtatgacccatcaacaaatgattatttggtggtt 138  Q
    ||||| |||||||||||||||||||||  ||||||||||| ||  ||||||||    
T  4031993 gttatttatatggttttgggtatgaccagtcaacaaatgactacctggtggtt 4031941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 42562498 - 42562445
Alignment:
Q  2 tctacctatggaatccatccactagagttcacaaacaaatacctttgtctccta 55  Q
    |||||||||||||||||||||   ||  ||||||||||||||||||||||||||    
T  42562498 tctacctatggaatccatccatcggacatcacaaacaaatacctttgtctccta 42562445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 42562426 - 42562380
Alignment:
Q  92 tatatggttttgggtatgacccatcaacaaatgattatttggtggtt 138  Q
    ||||||||||||||||||| |  ||||||||||||||||| ||||||    
T  42562426 tatatggttttgggtatgatcactcaacaaatgattatttagtggtt 42562380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 179122 - 179163
Alignment:
Q  188 ttttctcgttgagagataataggtggaaagaaattgagggta 229  Q
    ||||||| |||||||||||||  |||||||||||||||||||    
T  179122 ttttctcattgagagataatacatggaaagaaattgagggta 179163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 24352770 - 24352824
Alignment:
Q  94 tatggttttgggtatgacccatcaacaaatgattatttggtggttgtagtttcat 148  Q
    ||||||||||||||||||  ||||||| ||||||| |||||||||  ||||||||    
T  24352770 tatggttttgggtatgacgaatcaacatatgattacttggtggtttcagtttcat 24352824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 24340405 - 24340449
Alignment:
Q  94 tatggttttgggtatgacccatcaacaaatgattatttggtggtt 138  Q
    ||||||||||||||||||  ||||||| ||||||| |||||||||    
T  24340405 tatggttttgggtatgacgaatcaacatatgattacttggtggtt 24340449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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