View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16302_low_1 (Length: 587)
Name: NF16302_low_1
Description: NF16302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16302_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 3958552 - 3957981
Alignment:
| Q |
1 |
ctctgaggaatagtaagagataacctaccgtagttcttagaaggggtatccaaaaagttgggtgatggtcactctaattccttatggaaaattggaaaca |
100 |
Q |
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| T |
3958552 |
ctctgaggaatagtaagagataacctacggtagttcttagaaggggtatccaaaaagttgggtgatggtcactctaattccttatggaaaattggaaaca |
3958453 |
T |
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| Q |
101 |
tgtttagcttggcccccttcctctaagagataacatttttgttttgtacgagaggatgttttgttcacttgatatctcaaataatatcgatgttctaact |
200 |
Q |
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| T |
3958452 |
tgtttagcttggcccccttcctctaagagataacatttttgttttgtacgagaggatgttttattcactcgatatctcaaataatatcgatgttccaact |
3958353 |
T |
|
| Q |
201 |
tcgattcaactctcacatcaagaggactcttggcgtttgagttgggtgggtggtgtgcaatattatgttaagttggtgtatttgttattgtcagacaaat |
300 |
Q |
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| T |
3958352 |
tcgattcaactctcacatcaagaggactcttggcgtttgagttgggtgggtggtgtgcaatattatgttaagttggcgtatttgttattgtcagacaaat |
3958253 |
T |
|
| Q |
301 |
gtattcctaatccatctcattatgtggtcgagaatgagggaattcgttcctcttgaaagaaagctttgcaccttcaaagatgattgttttctcttggcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3958252 |
gtattcctaatccatctcattatgtggtcgagaatgagggaattcgttcctcttgaaagaaagctttgcaccttcaaagatgattgttttctcttggcaa |
3958153 |
T |
|
| Q |
401 |
ttgtcgttgcataaactcccaactaactaggctgaaccgctcgagtagaggtgtgattttagtggatgactcttcactgcgggcttttttatgacagtga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3958152 |
ttgtcgttgcataaactcccaactaactaggctgaacctctcgagtagaggtgtgattttagtggataactcttcactgcgggcttttttatgacagtga |
3958053 |
T |
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| Q |
501 |
ctaggatgacgaacatgtacatcatttatttgattttagaatgttctcaacatctatttgatatgagatgtt |
572 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3958052 |
ctaggatgacgaatatgtacatcatttatttgattttagaatgttctcaacatctatttgatatgagatgtt |
3957981 |
T |
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