View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16302_low_2 (Length: 397)
Name: NF16302_low_2
Description: NF16302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16302_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 25933544 - 25933413
Alignment:
| Q |
10 |
gacatcatcacaaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaacc |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25933544 |
gacaccatcacaaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaacc |
25933445 |
T |
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| Q |
110 |
aagtgatcaaccttttcaggattacctgcttg |
141 |
Q |
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| T |
25933444 |
aagtgatcaaccttttcagaattacctgcttg |
25933413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 25933329 - 25933161
Alignment:
| Q |
201 |
aaggaaaaagaagtactgacttggatgacgaacagtggctctgacagtgtaaccacgttgaagtagaaacttaacaatccatgaagcaataaaaccatta |
300 |
Q |
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||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25933329 |
aaggagaaagaagcactgacttgggtgacgaacagttgctctgacagtgtaaccacattgaaggagaaacttaacaatccatgaagcaataaaaccatta |
25933230 |
T |
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| Q |
301 |
gcacctgtcacacacaccacctttccttctccactcatcatccttctacgattgcttgtaattgaaattatccctata |
378 |
Q |
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| T |
25933229 |
gcacctgtcacacacaccacttttccttccccactcatcatcc---------tgcttgtaattgaaattatccctata |
25933161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 26101063 - 26100932
Alignment:
| Q |
10 |
gacatcatcacaaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaacc |
109 |
Q |
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| T |
26101063 |
gacaccatcacaaccctcaacaacagagtcaaaggaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaagc |
26100964 |
T |
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| Q |
110 |
aagtgatcaaccttttcaggattacctgcttg |
141 |
Q |
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| T |
26100963 |
aagtggtcaacctttttaggattacctgcttg |
26100932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 188 - 340
Target Start/End: Complemental strand, 26100849 - 26100697
Alignment:
| Q |
188 |
gagaaagaatttgaaggaaaaagaagtactgacttggatgacgaacagtggctctgacagtgtaaccacgttgaagtagaaacttaacaatccatgaagc |
287 |
Q |
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||||||||| |||||||||||| | | || |||||| | ||| |||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
26100849 |
gagaaagaagttgaaggaaaaacatgcacatacttgggtcacggacagtggctcggacagtgtaaccacgttggagtaggaacttgacaatccatgaagc |
26100750 |
T |
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| Q |
288 |
aataaaaccattagcacctgtcacacacaccacctttccttctccactcatca |
340 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
26100749 |
tataaaaccagaagcacctgtcacacacaccacctttccttccccactcatca |
26100697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 29548865 - 29548725
Alignment:
| Q |
201 |
aaggaaaaagaagtactgacttggatgacgaacagtggctctgacagtgtaaccacgttgaagtagaaacttaacaatccatgaagcaataaaaccatta |
300 |
Q |
| |
|
||||| ||||||| ||||||| || | ||||||||||||||| ||||| ||||||||||| || |||||||| |||| |||||||||||| ||||| | |
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| T |
29548865 |
aaggagaaagaagcactgactagggtcacgaacagtggctctaacagtataaccacgttggagaagaaacttgacaacccatgaagcaatgaaacctgaa |
29548766 |
T |
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| Q |
301 |
gcacctgtcacacacaccacctttccttctccactcatcat |
341 |
Q |
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|||||||| |||||||| ||||| ||||| |||||| |||| |
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| T |
29548765 |
gcacctgttacacacacaaccttaccttcaccactcttcat |
29548725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 29549050 - 29548958
Alignment:
| Q |
31 |
aacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaaccaagtgatcaacctt |
123 |
Q |
| |
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|||||| ||||| ||||||||||| | | |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
29549050 |
aacagaatcaaaggaaccttcttcaagtaaatctgccttaaagagttgcaacctttcctttgcaccatcaagtttaagcaagtgatcaacctt |
29548958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 329
Target Start/End: Complemental strand, 29555019 - 29554904
Alignment:
| Q |
214 |
tactgacttggatgacgaacagtggctctgacagtgtaaccacgttgaagtagaaacttaacaatccatgaagcaataaaaccattagcacctgtcacac |
313 |
Q |
| |
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|||| |||||||| ||||||||||||||| |||||||||||||||||||| ||||| || |||| ||||||||||||| |||| |||||| || |||| |
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| T |
29555019 |
tactaacttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaagcaccagttacac |
29554920 |
T |
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| Q |
314 |
acaccacctttccttc |
329 |
Q |
| |
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| |||||||||||||| |
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| T |
29554919 |
aaaccacctttccttc |
29554904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 29555253 - 29555154
Alignment:
| Q |
37 |
gtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaaccaagtgatcaaccttttcaggattacct |
136 |
Q |
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|||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||| |||||||||||||||| || || |||||||| | |||||||||| |
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| T |
29555253 |
gtcaaatgaaccttcttctaatagatctgccttgaagaggtgcaacctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacct |
29555154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 29559194 - 29559120
Alignment:
| Q |
255 |
acgttgaagtagaaacttaacaatccatgaagcaataaaaccattagcacctgtcacacacaccacctttccttc |
329 |
Q |
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|||||| || ||||||||||||| ||||||||||||| |||| | ||||||| |||||||| ||||||||||| |
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| T |
29559194 |
acgttggagaagaaacttaacaagccatgaagcaatataacctgaaccacctgttacacacacaacctttccttc |
29559120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 87900 - 87805
Alignment:
| Q |
28 |
aacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaaccaagtgatcaacctt |
123 |
Q |
| |
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||||||||| ||||| | ||||||||| | |||| |||||| || |||||||| |||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
87900 |
aacaacagaatcaaaggcaccttcttcaagtagatttgccttgaacagttgcaatctctccttagcaccatcaagcttaaccaagtggtcaacctt |
87805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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