View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16303_low_1 (Length: 295)
Name: NF16303_low_1
Description: NF16303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16303_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 5336444 - 5336725
Alignment:
| Q |
1 |
ttttttaatttcaattcatctgctttaagtttctggttcaggagcgggaggccgtagaagtggttggagtgctttaacaacaatgctcatattgggccta |
100 |
Q |
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| T |
5336444 |
ttttttaatttcaattcatctgcttcaagtttctggttcaggagcgggaggccgcagaagtggttggagtgctttaacaacaatgctcatattgggccta |
5336543 |
T |
|
| Q |
101 |
aaatcagcttcatcttgcaaacacagtgctgctatagctgcaacctgcatagacaatgatattcattgttacaaccaagctcataatagaagattcaacg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
5336544 |
aaatcagcttcatcttgcaaacacagtgctgctatagctgcaacctgcatagacaatgatattcattgttacaaccaagctcagaaaagaagattcaacg |
5336643 |
T |
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| Q |
201 |
atcatgaggctgcgtgtaaagg--gagagagagggagagatacagaaaagagttaccttagcagctgctactgggggatatt |
280 |
Q |
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| T |
5336644 |
atcatgaggctgcgcgtaaagggagagagagagggagagatacagaaaagagttaccttagcagctgctactgcgggatatt |
5336725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 3 - 280
Target Start/End: Complemental strand, 52719303 - 52719023
Alignment:
| Q |
3 |
ttttaatttcaattcatctgctttaagtttctggttcaggagcgggaggccgtagaagtggttggagtgctttaacaacaatgctcatattgggcctaaa |
102 |
Q |
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|||||| |||||||||||||||| ||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52719303 |
ttttaacttcaattcatctgcttcaagtttctggtgcaggagcgggagccttcagaagtggctggagtgctttaacaacaatgctcatattgggcctaaa |
52719204 |
T |
|
| Q |
103 |
atcagcttcatcttgcaaacacagtgctgctatagctgcaacctgcatagacaatgatattcattgttacaacc-aagctcataatagaagattcaacga |
201 |
Q |
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| T |
52719203 |
ctcagcttcatactgcacacaaagtgctgctacagctgcaagctgcacagtcaacgatatccattgttacaaccaaagctcagaatagaagatctaagga |
52719104 |
T |
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| Q |
202 |
tcatgaggc--tgcgtgtaaagggagagagagggagagatacagaaaagagttaccttagcagctgctactgggggatatt |
280 |
Q |
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|||| || | |||| ||||||||| |||||||||||| |||||||| ||||||||||||| || || ||||||||||| |
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| T |
52719103 |
tcataagtctgtgcgcctaaagggagggagagggagagagacagaaaatagttaccttagcaactccttttgggggatatt |
52719023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 23410164 - 23410107
Alignment:
| Q |
56 |
agaagtggttggagtgctttaacaacaatgctcatattgggcctaaaatcagcttcat |
113 |
Q |
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| T |
23410164 |
agaagtggctggagagctttgacaacaattgtcatgtttggcctaaaatcagcttcat |
23410107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 37217073 - 37216988
Alignment:
| Q |
56 |
agaagtggttggagtgctttaacaacaatgctcatattgggcctaaaatcagcttcatcttgcaaacacagtgctgctatagctgc |
141 |
Q |
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|||||||| ||||| ||||| |||||||| |||| || |||| ||||||||||||| ||||| |||||||||||| | |||||| |
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| T |
37217073 |
agaagtggctggagagctttgacaacaattgtcatgtttggccggaaatcagcttcatattgcacacacagtgctgcaacagctgc |
37216988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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