View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16304_high_1_N (Length: 637)

Name: NF16304_high_1_N
Description: NF16304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16304_high_1_N
NF16304_high_1_N
[»] chr8 (3 HSPs)
chr8 (1-637)||(40219262-40219896)
chr8 (91-128)||(19297930-19297967)
chr8 (110-158)||(41091451-41091499)
[»] chr2 (5 HSPs)
chr2 (1-391)||(10206810-10207193)
chr2 (5-491)||(37108054-37108545)
chr2 (378-459)||(5539499-5539580)
chr2 (93-158)||(36400494-36400559)
chr2 (91-155)||(34352689-34352753)
[»] chr5 (5 HSPs)
chr5 (263-491)||(34423936-34424164)
chr5 (378-459)||(43400479-43400560)
chr5 (387-491)||(22033640-22033744)
chr5 (91-327)||(22031200-22031436)
chr5 (405-446)||(24518868-24518909)
[»] chr7 (5 HSPs)
chr7 (14-74)||(32429693-32429753)
chr7 (93-158)||(29802514-29802579)
chr7 (381-449)||(26159303-26159371)
chr7 (94-157)||(13760878-13760941)
chr7 (91-157)||(35768976-35769042)
[»] chr6 (4 HSPs)
chr6 (103-159)||(31439370-31439426)
chr6 (405-491)||(2821273-2821359)
chr6 (383-449)||(9856675-9856741)
chr6 (91-285)||(19248711-19248905)
[»] chr1 (3 HSPs)
chr1 (91-155)||(5413219-5413283)
chr1 (106-157)||(22157819-22157870)
chr1 (80-134)||(10608156-10608210)
[»] chr4 (3 HSPs)
chr4 (92-131)||(48782788-48782827)
chr4 (97-187)||(19497482-19497572)
chr4 (91-128)||(54824860-54824897)
[»] chr3 (2 HSPs)
chr3 (106-157)||(15206041-15206092)
chr3 (102-163)||(52344122-52344183)
[»] scaffold0094 (1 HSPs)
scaffold0094 (91-136)||(24056-24101)


Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 637
Target Start/End: Complemental strand, 40219896 - 40219262
Alignment:
Q  1 tgataactatagccaaaattcacatgttttgactttaaccataagaaataatttaatttgacctattcaacaaggaccaaaggaatagtgaccgtatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40219896 tgataactatagccaaaattcacatgttttgactttaaccataagaaataatttaatttgacctattcaacaaggaccaaaggaatagtgaccgtatttt 40219797  T
Q  101 ggaacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaattactttcataaatgtgtgagtgaatctaggcagcctcgccattga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40219796 ggaacacacggttgttcctttccttccatatcaccccaatagaagcaaaccaaattactttcataaatgtgtgagtgaatctaggcagccccgccattga 40219697  T
Q  201 agtgaattgaataaaatgttgtctgatgttaccagcggacaccgaagaaatatgcaaccagtgccaaacatgataccaaagagagttgagtatgtcacaa 300  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||    
T  40219696 agtgaattgaataaaactttgtcggatgttaccagcggacaccgaagaaatatgtaaccagcgccaaacatgataccaaagagagctgagtatgtcacaa 40219597  T
Q  301 tgtaagaaaaaatgtgttgacgtttccaaccctccacaacctgtaatacaaactgtgtctgtaatgggaatgacttgccgccgcaccaaattatctttcg 400  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40219596 tgtaagaacaaatgtgttgacgtttccaaccctccacaacctgcaatacaaattgtgtctgtaatgggaatgacttgccgccgcaccaaattatctttcg 40219497  T
Q  401 taaaaagtctattacggagaagccgccacacgaacacagacacctttgatgaaatatgcctttgtcagatatcatcaaccatagtcctatcgagaggctc 500  Q
    ||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  40219496 taggaagtctattatggagaagccgccacacgaacacagacacctttgatgaaatatgtctttgccagatatcatcaaccatagtcctatcgagaggctc 40219397  T
Q  501 gccgatagtggtaagaaagcaatatattgtaattatattaatcagtctaatcttttgacttctnnnnnnnnnnnnnnnnnntctaatctttagatacaat 600  Q
     ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||                  |||||||||||||||||||    
T  40219396 accggtagtggtaagaaagtaatatattgtaattatattaatcagtctaatctttagacttct--caaaaaaaaaaaaaaatctaatctttagatacaat 40219299  T
Q  601 atgaagctgttgagaacttgacacaccaacaaaaaca 637  Q
    |||||||||||||||||||||||||||||||||||||    
T  40219298 atgaagctgttgagaacttgacacaccaacaaaaaca 40219262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 19297967 - 19297930
Alignment:
Q  91 accgtattttggaacacacggttgttcctttccttcca 128  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  19297967 accgtattttggaagacacggttattcctttccttcca 19297930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 41091499 - 41091451
Alignment:
Q  110 ggttgttcctttccttccatatcaccccaatagaagcaaactaaattac 158  Q
    |||||||||||||||| || ||||||| || |||||||||| |||||||    
T  41091499 ggttgttcctttcctttcaaatcacccaaacagaagcaaaccaaattac 41091451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 10206810 - 10207193
Alignment:
Q  1 tgataactatagccaaaattcacatgttttgactttaaccataagaaataatttaatttgacctattcaacaaggaccaaaggaatagtgaccgtatttt 100  Q
    ||||||||||||||||||||||| | |||| |||| |||||||||||| ||||||||||||| | ||||||||| ||  ||||| ||| || || |||||    
T  10206810 tgataactatagccaaaattcacctattttaacttcaaccataagaaagaatttaatttgacttgttcaacaagaacagaaggattagagatcgaatttt 10206909  T
Q  101 ggaacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaattactttcataaatgtgtgagtgaatctaggcagcctcgccattga 200  Q
    |||||||||||||||||||||||||||| | ||||| || |||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||    
T  10206910 ggaacacacggttgttcctttccttccaaagcacccaaacagaagcaaaccaaattacttccataaatgtgtgagtgaatctagacagccccgccattga 10207009  T
Q  201 agtgaattgaataaaatgttgtctgatgttaccagcggacaccgaagaaatatgcaaccagtgccaaacatgataccaaagagagttgagtatgtcacaa 300  Q
    |||||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||    
T  10207010 agtgaattgaataaaatgttgtatgatgttaccaggggacaacgaagaaatatgtaactagcgccaaacatgataccaaagagagttgagtatgtcacaa 10207109  T
Q  301 tgtaagaaaaaatgtgttgacgtttccaaccctccacaacctgtaatacaaactgtgtctgtaatgggaatgacttgccgccgcaccaaat 391  Q
    ||| | ||        ||| ||||||||| |||||||||||||||||||   | ||||||||| | |||||||||||||||||||||||||    
T  10207110 tgtcaaaa-------cttgtcgtttccaaacctccacaacctgtaatacgtgccgtgtctgtatttggaatgacttgccgccgcaccaaat 10207193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 5 - 491
Target Start/End: Original strand, 37108054 - 37108545
Alignment:
Q  5 aactatagccaaaattcacatgttttgactttaaccataagaaataatttaatttgacctattcaacaaggaccaaaggaatagtgaccgtattttggaa 104  Q
    ||||||||  |||| |||| |||||||| || |||||||||||| ||||||||||||||| ||| ||||| || ||| || ||| |||||||||||||||    
T  37108054 aactatagtgaaaagtcacctgttttgatttaaaccataagaaagaatttaatttgacctgttcgacaagaacaaaaagattagagaccgtattttggaa 37108153  T
Q  105 cacacggttgttcctttccttccatatcaccccaatagaagcaaactaaattactttcataaatgtgtgagtgaatctag----gcagcctcgccattga 200  Q
    || ||||||||||||||||||||| | || |  || ||| |||||| |||||| |||||| ||||| |||||||||||||    ||| |  || ||| ||    
T  37108154 catacggttgttcctttccttccaaagcatctaaacagaggcaaaccaaattattttcatgaatgtatgagtgaatctagctaggcaactccgtcataga 37108253  T
Q  201 agtgaattgaataaaatgttgtctgatgttaccagcggacaccgaagaaatatgcaaccagtgccaaacatgataccaaagagagttgagtatgtcacaa 300  Q
    ||||||| |||| |||| |||| |||||| |||||  || ||| |||||||||| |||||  | ||||||| | ||||||||||| ||| ||| ||||||    
T  37108254 agtgaatagaatgaaatattgtttgatgtcaccaggagaaaccaaagaaatatgtaaccaacgtcaaacataagaccaaagagagatgaatatatcacaa 37108353  T
Q  301 tgtaagaaaaaatgtgttgacgtttccaaccctccacaacctgtaatacaaactgtgtctgtaatgggaatgac-ttgccgccgcaccaaattatctttc 399  Q
    | |||||| | |||||||| ||||||||| ||||||||||||| ||| ||| | || ||| ||     |||||| || || ||| ||||||||||||||     
T  37108354 tataagaacagatgtgttgccgtttccaaacctccacaacctgaaatgcaagccgtatctataggttaaatgacattaccaccgtaccaaattatctttt 37108453  T
Q  400 gtaaaaagtctattacggagaagccgccacacgaacacagacacctttgatgaaatatgcctttgtcagatatcatcaaccatagtcctatc 491  Q
    |||  ||||||||| |||||||||||||| ||||||| |||||||||||| | ||||||| |||| |||| ||||||||||| |||||||||    
T  37108454 gtaggaagtctattgcggagaagccgccaaacgaacagagacacctttgacggaatatgcttttgccagacatcatcaaccagagtcctatc 37108545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 459
Target Start/End: Complemental strand, 5539580 - 5539499
Alignment:
Q  378 ccgccgcaccaaattatctttcgtaaaaagtctattacggagaagccgccacacgaacacagacacctttgatgaaatatgc 459  Q
    ||||||||||||||| ||||| |||  |||||| || || || || |||||||| |||| |||||||||||| | |||||||    
T  5539580 ccgccgcaccaaattgtctttagtaggaagtctgttgcgtaggaggcgccacacaaacagagacacctttgaaggaatatgc 5539499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 36400494 - 36400559
Alignment:
Q  93 cgtattttggaacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaattac 158  Q
    |||||||||||| ||||| || ||||| |||||||||||||||| || ||  |||||| |||||||    
T  36400494 cgtattttggaatacacgattattcctctccttccatatcacccaaacagttgcaaaccaaattac 36400559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 34352689 - 34352753
Alignment:
Q  91 accgtattttggaacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaat 155  Q
    |||| ||||||||| ||||| |||||||||||||||||||  |||| || |||| ||||| ||||    
T  34352689 accgcattttggaatacacgcttgttcctttccttccataaaaccctaacagaatcaaaccaaat 34352753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 263 - 491
Target Start/End: Complemental strand, 34424164 - 34423936
Alignment:
Q  263 gccaaacatgataccaaagagagttgagtatgtcacaatgtaagaaaaaatgtgttgacgtttccaaccctccacaacctgtaatacaaactgtgtctgt 362  Q
    |||||| |||| |||||||||||   |  |||||||||| ||| |||| |||| ||  |||||||||| | ||||| ||||  |||||| | ||||| |     
T  34424164 gccaaatatgagaccaaagagagccaaaaatgtcacaatataaaaaaagatgttttcccgtttccaactccccacagcctgagatacaagccgtgtcag- 34424066  T
Q  363 aatgg-gaatgacttgccgccgcaccaaattatctttcgtaaaaagtctattacggagaagccgccacacgaacacagacacctttgatgaaatatgcct 461  Q
    ||||  ||| ||| ||||||||||||||||||||||| ||   |||||| || || ||||| |||||||| |||| |||||||||||| | ||||||  |    
T  34424065 aatgatgaaggacatgccgccgcaccaaattatcttttgtgggaagtctgttgcgaagaagacgccacacaaacagagacacctttgaaggaatatgttt 34423966  T
Q  462 ttgtcagatatcatcaaccatagtcctatc 491  Q
    ||| |||| ||| ||| ||| |||||||||    
T  34423965 ttgccagacatcgtcatccagagtcctatc 34423936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 459
Target Start/End: Original strand, 43400479 - 43400560
Alignment:
Q  378 ccgccgcaccaaattatctttcgtaaaaagtctattacggagaagccgccacacgaacacagacacctttgatgaaatatgc 459  Q
    |||||||||||||||||| || |||  |||||| |||||||| || | ||| ||||||||||||||||| |||| |||||||    
T  43400479 ccgccgcaccaaattatccttagtaggaagtctgttacggaggagtcaccaaacgaacacagacaccttggatggaatatgc 43400560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 387 - 491
Target Start/End: Original strand, 22033640 - 22033744
Alignment:
Q  387 caaattatctttcgtaaaaagtctattacggagaagccgccacacgaacacagacacctttgatgaaatatgcctttgtcagatatcatcaaccatagtc 486  Q
    |||||| ||||| || | |||||| || || ||||| ||||||||||||| |||||||||||| | ||||| | |||  |||| ||| ||||||||||||    
T  22033640 caaattgtcttttgtgataagtctgttgcgaagaagacgccacacgaacagagacacctttgaaggaatattcttttaccagacatcgtcaaccatagtc 22033739  T
Q  487 ctatc 491  Q
    |||||    
T  22033740 ctatc 22033744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 327
Target Start/End: Original strand, 22031200 - 22031436
Alignment:
Q  91 accgtattttggaacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaattactttcataaatgtgtgagtgaatctaggcagcc 190  Q
    |||||||||| ||| |||||||  ||| |||||||||| |  |||| ||   | |||||| |||| | |||||  ||||  ||||| |||||||||| ||    
T  22031200 accgtatttttgaagacacggtcattcttttccttccaaaggacccaaactaaggcaaaccaaataattttcaagaatgaatgagtaaatctaggcaacc 22031299  T
Q  191 tcgccattgaagtgaattgaataaaatgttgtctgatgttaccagcggacaccgaagaaatatgcaaccagtgccaaacatgataccaaagagagttgag 290  Q
     ||||||  | || |||||||| ||| |||||||||||| |||||   | ||||| ||||| || |||||  |||  |||||| |||||||||||| ||     
T  22031300 ccgccatatatgtaaattgaatgaaaagttgtctgatgtcaccaggtaagaccgacgaaatttgtaaccaacgccgcacatgagaccaaagagagtcgaa 22031399  T
Q  291 tatgtcacaatgtaagaaaaaatgtgttgacgtttcc 327  Q
      |||| |||||||| || | |||||||| |||||||    
T  22031400 agtgtcgcaatgtaaaaacagatgtgttgtcgtttcc 22031436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 446
Target Start/End: Original strand, 24518868 - 24518909
Alignment:
Q  405 aagtctattacggagaagccgccacacgaacacagacacctt 446  Q
    ||||||||| |||||||| |||||||||||||| ||||||||    
T  24518868 aagtctattgcggagaaggcgccacacgaacactgacacctt 24518909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 32429693 - 32429753
Alignment:
Q  14 caaaattcacatgttttgactttaaccataagaaataatttaatttgacctattcaacaag 74  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||| |||||    
T  32429693 caaaattcacctgttttgacttcaaccataagaaagaatttaatttgacctgttcgacaag 32429753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 29802579 - 29802514
Alignment:
Q  93 cgtattttggaacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaattac 158  Q
    ||||||||| || |||||||||||||||||||||||||| |||| | || |||||| | |||||||    
T  29802579 cgtattttgtaagacacggttgttcctttccttccatattacccaagtacaagcaagccaaattac 29802514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 449
Target Start/End: Complemental strand, 26159371 - 26159303
Alignment:
Q  381 ccgcaccaaattatctttcgtaaaaagtctattacggagaagccgccacacgaacacagacacctttga 449  Q
    |||||||||||||||||| |||  |||||| ||||| ||||  |||||||| |||| ||||||||||||    
T  26159371 ccgcaccaaattatctttagtaggaagtctgttacgaagaacgcgccacacaaacagagacacctttga 26159303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 13760941 - 13760878
Alignment:
Q  94 gtattttggaacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaatta 157  Q
    |||||||| || |||||||| ||||||||||| |||||||||| || || ||||||| ||||||    
T  13760941 gtattttgaaagacacggttattcctttcctttcatatcacccaaacagtagcaaaccaaatta 13760878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 35768976 - 35769042
Alignment:
Q  91 accgtattttggaacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaatta 157  Q
    |||||||||||||| | ||||||||||||||| ||||| |||| || |||||  |||||| ||||||    
T  35768976 accgtattttggaatatacggttgttcctttctttccaaatcatccaaatagttgcaaaccaaatta 35769042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 31439426 - 31439370
Alignment:
Q  103 aacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaattact 159  Q
    ||||| |||||||||||||||||||| ||||| | || |||||||||| ||||||||    
T  31439426 aacacgcggttgttcctttccttccaaatcactcaaacagaagcaaaccaaattact 31439370  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 491
Target Start/End: Original strand, 2821273 - 2821359
Alignment:
Q  405 aagtctattacggagaagccgccacacgaacacagacacctttgatgaaatatgcctttgtcagatatcatcaaccatagtcctatc 491  Q
    |||||||||| ||||||| ||||||||||||| | |||||||||| | ||| ||| | || ||||| ||||| || | |||||||||    
T  2821273 aagtctattatggagaagacgccacacgaacaaatacacctttgaaggaatctgcttatgccagatgtcatctacaagagtcctatc 2821359  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 449
Target Start/End: Original strand, 9856675 - 9856741
Alignment:
Q  383 gcaccaaattatctttcgtaaaaagtctattacggagaagccgccacacgaacacagacacctttga 449  Q
    ||||||||||||||||||||  || |||||||||||| |  |||||||| ||||  |||||||||||    
T  9856675 gcaccaaattatctttcgtaggaactctattacggagcaagcgccacaccaacaaggacacctttga 9856741  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 285
Target Start/End: Original strand, 19248711 - 19248905
Alignment:
Q  91 accgtattttggaacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaattactttcataaatgtgtgagtgaatctaggcagcc 190  Q
    |||| |||||||||||| || || || |||||||| || | ||||| |||||| |||||| |||| | ||||| ||| |  ||||| ||||| || |  |    
T  19248711 accgaattttggaacactcgattattactttcctttcaaagcacccaaatagaggcaaaccaaatgattttcaaaaaagaatgagtaaatcttggtaaac 19248810  T
Q  191 tcgccattgaagtgaattgaataaaatgttgtctgatgttaccagcggacaccgaagaaatatgcaaccagtgccaaacatgataccaaagagag 285  Q
     | |||| ||||| |||||||| |||  ||||||||||| | |||   | ||| | |||||||| |||||  ||||||||||| |||||||||||    
T  19248811 cctccatagaagtaaattgaatgaaaaattgtctgatgtcagcaggtaaaaccaacgaaatatgtaaccaacgccaaacatgagaccaaagagag 19248905  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 5413219 - 5413283
Alignment:
Q  91 accgtattttggaacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaat 155  Q
    |||| ||||||||| |||||||| |||||||||||||| | ||||| || |||||||||| ||||    
T  5413219 accgaattttggaagacacggttattcctttccttccaaaacacccaaacagaagcaaaccaaat 5413283  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 22157819 - 22157870
Alignment:
Q  106 acacggttgttcctttccttccatatcaccccaatagaagcaaactaaatta 157  Q
    ||||||||||||||||||||||| ||||||| || ||| |||||| ||||||    
T  22157819 acacggttgttcctttccttccaaatcacccaaacagatgcaaaccaaatta 22157870  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 10608210 - 10608156
Alignment:
Q  80 aaggaatagtgaccgtattttggaacacacggttgttcctttccttccatatcac 134  Q
    |||||||||| |||| ||||||||| |||||||||||||| || ||||| |||||    
T  10608210 aaggaatagttaccgcattttggaatacacggttgttcctctctttccaaatcac 10608156  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 48782788 - 48782827
Alignment:
Q  92 ccgtattttggaacacacggttgttcctttccttccatat 131  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  48782788 ccgtatttttgaagacacggttgttcctttccttccatat 48782827  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 19497482 - 19497572
Alignment:
Q  97 ttttggaacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaattactttcataaatgtgtgagtgaatctaggca 187  Q
    |||||||| |||||||  |||||||||||||| || |||| |||||| |||||| |||| ||| | |  ||||  ||||||||||||||||    
T  19497482 ttttggaatacacggtgattcctttccttccaaataacccaaatagaggcaaaccaaatgactgtgaagaatgaatgagtgaatctaggca 19497572  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 54824860 - 54824897
Alignment:
Q  91 accgtattttggaacacacggttgttcctttccttcca 128  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  54824860 accgtattttggaagacacggttattcctttccttcca 54824897  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 15206092 - 15206041
Alignment:
Q  106 acacggttgttcctttccttccatatcaccccaatagaagcaaactaaatta 157  Q
    ||||||||||||||||||||||| ||||||| || ||| |||||| ||||||    
T  15206092 acacggttgttcctttccttccaaatcacccaaacagatgcaaaccaaatta 15206041  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 52344122 - 52344183
Alignment:
Q  102 gaacacacggttgttcctttccttccatatcaccccaatagaagcaaactaaattactttca 163  Q
    |||||||||||| || ||||||||||| || |||| || |||||||||| | ||||||||||    
T  52344122 gaacacacggttatttctttccttccaaatgacccaaacagaagcaaaccagattactttca 52344183  T

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Target: scaffold0094 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 24101 - 24056
Alignment:
Q  91 accgtattttggaacacacggttgttcctttccttccatatcaccc 136  Q
    |||||||||||||| | ||||||||||||||| ||||| |||||||    
T  24101 accgtattttggaataaacggttgttcctttctttccaaatcaccc 24056  T

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