View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16304_high_2 (Length: 421)
Name: NF16304_high_2
Description: NF16304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16304_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 30 - 410
Target Start/End: Original strand, 51273743 - 51274120
Alignment:
| Q |
30 |
aattttatctcaaagcataaactcctcgtatcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaat |
129 |
Q |
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| T |
51273743 |
aattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctcaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaat |
51273842 |
T |
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| Q |
130 |
tcgaccttaaactcagcaatataacaagataaat-catc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaagaccataca |
227 |
Q |
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| T |
51273843 |
tcgatcctaaacttgacaatataacaagaaaaaaacatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacg |
51273942 |
T |
|
| Q |
228 |
tggtagagtctaccatgtatgcaacatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgt |
327 |
Q |
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| T |
51273943 |
tggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtca-caataaacgtgaccgtgt |
51274041 |
T |
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| Q |
328 |
actcgaaggcttcgtttgcgaaccttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
410 |
Q |
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| T |
51274042 |
actagaaggctttgtttgtgaacctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 251 - 410
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
251 |
acatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaac |
350 |
Q |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
351 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
410 |
Q |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
5051299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 5051624 - 5051458
Alignment:
| Q |
30 |
aattttatctcaaagcataaactcctcgtatcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaat |
129 |
Q |
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| T |
5051624 |
aattttatctcaaagcgtaaactcctcgtatggttctcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaat |
5051525 |
T |
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| Q |
130 |
tcgaccttaaactcagcaatataacaagat-aaatcatccttatattcgagaattgttggattttca |
195 |
Q |
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| T |
5051524 |
tcgaccctaaactcgacaatataacaagataaaatcatccttatattcgagaattgttggattttca |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 60 - 291
Target Start/End: Original strand, 14907802 - 14908035
Alignment:
| Q |
60 |
tcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagat |
159 |
Q |
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| T |
14907802 |
tcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataacaagaa |
14907901 |
T |
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| Q |
160 |
aa-atcatc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaagaccatacatggtagagtctaccatgtatgcaacatcct |
257 |
Q |
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| T |
14907902 |
aataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcct |
14908001 |
T |
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| Q |
258 |
cacgaaagattggatcaaacttccactccctcca |
291 |
Q |
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||| |||||| |||||||| |||||||||||||| |
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| T |
14908002 |
cacaaaagataggatcaaatttccactccctcca |
14908035 |
T |
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