View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16304_high_3 (Length: 387)
Name: NF16304_high_3
Description: NF16304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16304_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 18244652 - 18244315
Alignment:
| Q |
17 |
acggcataagaagacgtccgacagcgagaatagaatgacccctttctgcaagacttactgacaatatatatggccatacatacatttgtggttatctcaa |
116 |
Q |
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| T |
18244652 |
acggcataagaagacgtctgacagctagaatagaatgacccctttctgcaagacttactgacaatatatatggccatacatacatttgtggttatctcaa |
18244553 |
T |
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| Q |
117 |
attccctatcttatagggaaccttatttttactcaactaggtaaaagtaaaaccatattgtaagcactttttacaattttagcagttctaatttgtagct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18244552 |
attccctatcttatagggaaccttatttttactcaactaggtaaaagtaaaaccatattgtaagcactttttacaattttagcagttctaatttgtagct |
18244453 |
T |
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| Q |
217 |
tcaccaaagaaaacaaattggtcataactacttgagtttggtttattgataaaacaatttttaatcagattttatttaccactcagttgaacttggatta |
316 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18244452 |
tcaccaaag--aacaaattggtcataactacttgaatttggtttattgataaaacaatttttaatcagattttatttaccactcagttgaacttggatta |
18244355 |
T |
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| Q |
317 |
tcagagtctattttccttaaaaactggagggttaacacga |
356 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |
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| T |
18244354 |
tcagagtctattttccttaaaaattggagggttaacacga |
18244315 |
T |
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