View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16304_low_1 (Length: 405)
Name: NF16304_low_1
Description: NF16304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16304_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 395
Target Start/End: Original strand, 18244285 - 18244658
Alignment:
| Q |
20 |
tttgccaatgtgaatttagaagnnnnnnnntcgtgttaaccctccagtttttaaggaaaatagactctgataatccaagttcaactgagtggtaaataaa |
119 |
Q |
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| T |
18244285 |
tttgccaatgtgagtttagaagaaaaaaaatcgtgttaaccctccaatttttaaggaaaatagactctgataatccaagttcaactgagtggtaaataaa |
18244384 |
T |
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| Q |
120 |
atctgattaaaaattgttttatcaataaaccaaactcaagtagttatgaccaatttgttttctttggtgaagctacaaattagaactgctaaaattgtaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18244385 |
atctgattaaaaattgttttatcaataaaccaaattcaagtagttatgaccaatttgtt--ctttggtgaagctacaaattagaactgctaaaattgtaa |
18244482 |
T |
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| Q |
220 |
aaagtgcttacaatatggttttacttttacctagttgagtaaaaataaggttccctataagatagggaatttgagataaccacaaatgtatgtatggcca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18244483 |
aaagtgcttacaatatggttttacttttacctagttgagtaaaaataaggttccctataagatagggaatttgagataaccacaaatgtatgtatggcca |
18244582 |
T |
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| Q |
320 |
tatatattgtcagtaagtcttgcagaaaggggtcattctattctcgctgtcagacgtcttcttatgccgtcctttg |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18244583 |
tatatattgtcagtaagtcttgcagaaaggggtcattctattctagctgtcagacgtcttcttatgccgtcctttg |
18244658 |
T |
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