View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16306_high_1 (Length: 468)
Name: NF16306_high_1
Description: NF16306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16306_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 15 - 456
Target Start/End: Original strand, 40633596 - 40634037
Alignment:
| Q |
15 |
agtttattgatgactttaatttgtaannnnnnnatggcaggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattgg |
114 |
Q |
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| T |
40633596 |
agtttattgatgactttaatttgtaatttttttatggcaggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattgg |
40633695 |
T |
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| Q |
115 |
catttcttcttgattatgttgcagatgcatctggtcagatccttcaagctgttttcattgcagttgcagtttttataataggtatatatttgaaaaagaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633696 |
catttcttcttgattatgttgcagatgcatctggtcagatccttcaagctgttttcattgcagttgcagtttttataataggtatatatttgaaaaagaa |
40633795 |
T |
|
| Q |
215 |
aatgattctactaaagttaatgccttgaaaaattccctttgttttgataaactgctcaaatattacttatatatgtatagtgttattatttgaacgtcac |
314 |
Q |
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| T |
40633796 |
aatgattctactaaagttaatgccttgaaaaattccctttgttttgataaattgctcaaatattacttatatatgtatagtgttatgatttgaacgtcac |
40633895 |
T |
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| Q |
315 |
agttctaacaccgccgatgtgattgaaagaaagaaaacaaatacataaaactcgaaatcttatgtttatatagtatccgacaatatttgttgtcaatata |
414 |
Q |
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| T |
40633896 |
aattctaacaccgccgatgtgattgaaagaaagaaaacaaatacataaaactcgaaatcttatgtttatatagtatccgacaatatttgttgtcaatata |
40633995 |
T |
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| Q |
415 |
ttttctattgtttaatttgtcatcactcaaactgtaaccttc |
456 |
Q |
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| T |
40633996 |
ttttctattgtttaatttgtcatcactcaaactgtaaccttc |
40634037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 48 - 201
Target Start/End: Original strand, 40645322 - 40645475
Alignment:
| Q |
48 |
atggcaggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcatttcttcttgattatgttgcagatgcatctg |
147 |
Q |
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| T |
40645322 |
atggcaggggcaactttatgcaaagggatgaatagaggattggggacattattagcagggttattgtcatttcttcttgattatgttgcaaatgaatctg |
40645421 |
T |
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| Q |
148 |
gtcagatccttcaagctgttttcattgcagttgcagtttttataataggtatat |
201 |
Q |
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| T |
40645422 |
gtcagatccttcaagctgttttcattgcatttgcagtttttataataggtatat |
40645475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 4782291 - 4782223
Alignment:
| Q |
51 |
gcaggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcattt |
119 |
Q |
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| T |
4782291 |
gcaggggcaactttatgcaaagggcttaacagaggattggggacactgttagctggattattggcattt |
4782223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 51850427 - 51850492
Alignment:
| Q |
53 |
aggggcaactttatgcaaagggctgaatagaggattggggacattattagcaggattattggcatt |
118 |
Q |
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| T |
51850427 |
agggggaaccttatgcaaaggactaaatagaggattgggaactttgttagcaggatcattggcatt |
51850492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 51820900 - 51820980
Alignment:
| Q |
60 |
actttatgcaaagggctgaatagaggattggggacattattagcaggattattggcatttcttcttgattatgttgcagat |
140 |
Q |
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|||||| ||||||| || || ||||||||||| || | ||||||||||| ||||||||| || |||| ||| |||||||| |
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| T |
51820900 |
actttaagcaaaggactaaacagaggattgggaacttcgttagcaggattgttggcattttttattgagtatcttgcagat |
51820980 |
T |
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