View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16306_low_1 (Length: 1095)

Name: NF16306_low_1
Description: NF16306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16306_low_1
NF16306_low_1
[»] chr7 (1 HSPs)
chr7 (61-1076)||(42341742-42342756)
[»] chr6 (1 HSPs)
chr6 (546-601)||(9522495-9522550)


Alignment Details
Target: chr7 (Bit Score: 938; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 938; E-Value: 0
Query Start/End: Original strand, 61 - 1076
Target Start/End: Complemental strand, 42342756 - 42341742
Alignment:
Q  61 gactggttttgactttagtatattcttcttggttcttgatctgcatcatgtgcacttttctcagttttaactacacaagaagatgcacttatgcatcaag 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42342756 gactggttttgactttagtatattcttcttggttcttgatctgcatcatgtgcacttttctcagttttaactacacaagaagatgcacttatgcatcaag 42342657  T
Q  161 gatttcactctttaccatgtgatgttttcttcacagatgacaacttgtattccttcttaagcctctcagtttctcttttgctttctgagctttcgtttga 260  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42342656 gatttcactctctaccatgtgatgttttcttcacagatgacaacttgtattccttcttaagcctctcagtttctcttttgctttctgagctttcgtttga 42342557  T
Q  261 actctcacgtttgtttcctctaaacactgcatgagataatcataagacagtaatttagatttgatttcaatccatttgattcaaaataaaaggagtttta 360  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42342556 actctcacgtttgtttcctctgaacactgcatgagataatcataagacagtaatttagatttgatttcaatccatttgattcaaaataaaaggagtttta 42342457  T
Q  361 atgtctctaaattttctatggctaattatagtttagaccatcattggttacctgttgtcttcttctcctctcgagttcagcctgaagaataaaagaagca 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42342456 atgtctctaaattttctatggctaattatagtttagaccatcattggttacctgttgtcttcttctcctctcgagttcagcctgaagaataaaagaagca 42342357  T
Q  461 tgatccttgtcagtataattgaatcactaaagaaaaactatcaaatattcttataatagttcatgttgtttggcagtaccagtgcctgtttcagttgaga 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42342356 tgatccttgtcagtataattgaatcactaaagaaaaactatcaaatattcttataatagttcatgttgtttggcagtaccagtgcctgtttcagttgaga 42342257  T
Q  561 attctcttctcttaattgattcagttctgcttctaattcaactgtataggcctgcnnnnnnnnnnnnnnnnnntgtgtcacaaaggagtcacattaacaa 660  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||    
T  42342256 attctcttctcttaattgattcagttctgcttctaattcaactgtataggcctgcaaaagcaacaaagaaaaatgtgtcacaaaggagtcacattaacaa 42342157  T
Q  661 tataatggcaaatattaaactagattaaacatactatttctaatttggatgtaaagagttgataaaaaattgacatattaccaattcttcttaaactaat 760  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42342156 tataatggcaaatattaaactagattaaacatactatttctaatttggatgtaaagagttgataaaaaattgacatattaccaattcttcttaaactaat 42342057  T
Q  761 gttaccttcaatagcatataaatataatgttgtattatcttgatcatatatacataagaatttcaaataattcatacatttgtggatacataattttaga 860  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42342056 gttaccttcaatagcatataaatataatgctgtattatcttgatcatatatacataagaatttcaaataattcatacatttgtggatacataattttaga 42341957  T
Q  861 tttaagtataatatgattggttaaaatttcaggaacctgttttctggctctagatcttgctgctgactctctattcttgatcatcctcctctgccttctc 960  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42341956 -ttaagtataatatgattggttaaaatttcaggaacctgttttctggctctagatcttgctgctgactctctattcttgatcatcctcctctgccttctc 42341858  T
Q  961 tccaccaccctttcaacaggaccatcaaccatcctctttcttcctcgtaaaccattcatatcaatcccaaattgaccacccgagttttcatttccaatcc 1060  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42341857 tccaccaccctttcaacaggaccatcaaccatcctctttcttcctcgtaaaccattcatatcaatcccaaattgaccacccgagttttcgtttccaatcc 42341758  T
Q  1061 catccgatgaaaccgg 1076  Q
    ||||||||||||||||    
T  42341757 catccgatgaaaccgg 42341742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 546 - 601
Target Start/End: Original strand, 9522495 - 9522550
Alignment:
Q  546 ctgtttcagttgagaattctcttctcttaattgattcagttctgcttctaattcaa 601  Q
    ||||||||||  |||||| |||| |||||| ||||||| |||||||||||||||||    
T  9522495 ctgtttcagtcaagaattatcttatcttaactgattcaattctgcttctaattcaa 9522550  T

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