View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16306_low_4 (Length: 454)
Name: NF16306_low_4
Description: NF16306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16306_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 35799757 - 35799552
Alignment:
| Q |
7 |
tacattattctttatactaactggtatatcgtgttttaaactgaagctgcctagatttgactattcaatgaataaataatttatttttcacaagtttttg |
106 |
Q |
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| T |
35799757 |
tacattcttctttatactaactggtatatcgtgttttaaactgaagctgcctagatttgactattcaatgaataaataatttatttttcacaagtttttg |
35799658 |
T |
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| Q |
107 |
catgatttttaaactgaagctgccttaaattatcaattgattctatttattcttttggttcacagataataggtttccaacagtgcctttgtgggaaaag |
206 |
Q |
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| T |
35799657 |
catgatttttaaactgaagctgccttaaattatcaattgattctatttattcttttggttcacagataataggtttccaacagtgcctttgtgggaaaag |
35799558 |
T |
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| Q |
207 |
cagttt |
212 |
Q |
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|||||| |
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| T |
35799557 |
cagttt |
35799552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 218 - 439
Target Start/End: Complemental strand, 35796061 - 35795838
Alignment:
| Q |
218 |
tcaaggcatcattgcatcagtaataccttcaacagggatcaaccactctgtagatgagcaaactgcatttaagttactggaattgtcgtgtgctataacg |
317 |
Q |
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| T |
35796061 |
tcaaggcatcattgcatcagtaataccttcaacagggatcaaccactctgtagatgagcaaactgcatttaaattactggaattgtcgtgtgctataaca |
35795962 |
T |
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| Q |
318 |
tgac--tgtgaaaacctttcgatctaggtgcagactgcagagtactgcataagaaaagtgaaannnnnnngctctttgataaccatttgaaacctgctta |
415 |
Q |
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| T |
35795961 |
tgactgtgtgaaaacctttcgatctaggtgcagactgcagagtactgcataagaaaagtgaattttttttgctctttgataaccatttgaaacctgctta |
35795862 |
T |
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| Q |
416 |
tcaatttgtaggaaatgtgttttt |
439 |
Q |
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| T |
35795861 |
tcaatttgtaggaaatgtgttttt |
35795838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 35761203 - 35761119
Alignment:
| Q |
129 |
ccttaaattatcaattgattctatttattc-ttttggttcacagataataggtttccaacagtgcctttgtgggaaaagcagttt |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35761203 |
ccttaaattatcaattgattctatttattccttttggttcgcagataataggtttccaacagtgcctttgtgggaaaagaagttt |
35761119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 35786138 - 35786057
Alignment:
| Q |
132 |
taaattatcaattgattctatttattc-ttttggttcacagataataggtttccaacagtgcctttgtgggaaaagcagttt |
212 |
Q |
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| T |
35786138 |
taaattattaattgattccatgtattccttttggttcacagctaataggtttccaacagtgccttcgtgggaaaagaagttt |
35786057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 35789985 - 35789909
Alignment:
| Q |
137 |
tatcaattgattctatttattcttttg-gttcacagataataggtttccaacagtgcctttgtgggaaaagcagttt |
212 |
Q |
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|||||||||||||||||||||||||| | | ||||||||| |||| |||||||||||||||||||||||| ||||| |
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| T |
35789985 |
tatcaattgattctatttattcttttttgctaacagataattggttaccaacagtgcctttgtgggaaaagaagttt |
35789909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 35802964 - 35802897
Alignment:
| Q |
255 |
atcaaccactctgtagatgagcaaactgcattt-aagttactggaattgtcgtgtgctataacgtgac |
321 |
Q |
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| T |
35802964 |
atcaaccactttgtagacgagcaaactgcattttaagttactggaattctcgggtgctatgacgtgac |
35802897 |
T |
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