View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16306_low_6 (Length: 402)
Name: NF16306_low_6
Description: NF16306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16306_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 387
Target Start/End: Original strand, 26449260 - 26449635
Alignment:
| Q |
12 |
acagagattgcaaatggatgtagtatgaaagcctctaagagagaggttatcatctgtaggaagcttgttatgcaacagtctccaaacaagcacggactta |
111 |
Q |
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| T |
26449260 |
acagagattgcaaatggatgtagtatgacagcctctaagagagaggttatcatctgtaggaagcttgttatgcaacagtctccaaacaagcaaggactta |
26449359 |
T |
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| Q |
112 |
gaaggagggatagcaatgtgccaaatgactttggcccaactgatgttctgaggctgattggaagtcaggaagagatatgcgtctttaaaagctagatttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26449360 |
gaaggagggatagcaatgtgccaaatgactttggcccaactgatgttctgaggctgattggaagtcaggaagagatatgcgtctttaaaagctaaatttc |
26449459 |
T |
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| Q |
212 |
catcatgagaggctttctatattagtttatcttctttagggaaaataggtatagtagtcaacaatagtttctgctgcaaagcaggatatgcaggcaaaga |
311 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||| ||||||| |||| | |
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| T |
26449460 |
catcatgagaggctttccatattagtttatcttctttagggacaataggtatagtagtcatcaatagtttttgctccaaagcagaatatgcaaccaaaaa |
26449559 |
T |
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| Q |
312 |
agcttgaggaacattccaatttgaatctttgatgtaggtatccacattagattgcagaagatgatgtaaattctga |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449560 |
agcttgaggaacattccaatttgaatctttgatgtaggtatccacattagattgcagaagatgatgtaaattctga |
26449635 |
T |
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