View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16306_low_7 (Length: 396)

Name: NF16306_low_7
Description: NF16306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16306_low_7
NF16306_low_7
[»] chr4 (6 HSPs)
chr4 (111-384)||(55047068-55047345)
chr4 (43-119)||(41128260-41128336)
chr4 (40-107)||(55048411-55048478)
chr4 (50-114)||(32116310-32116374)
chr4 (243-288)||(55048201-55048246)
chr4 (18-47)||(55047388-55047417)
[»] chr8 (1 HSPs)
chr8 (50-120)||(33863584-33863654)
[»] chr5 (6 HSPs)
chr5 (50-114)||(6775579-6775643)
chr5 (50-114)||(6784681-6784745)
chr5 (50-114)||(17491354-17491418)
chr5 (43-107)||(18915714-18915778)
chr5 (50-114)||(34367077-34367141)
chr5 (43-107)||(25345980-25346044)
[»] chr3 (2 HSPs)
chr3 (50-114)||(33161726-33161790)
chr3 (50-114)||(41876081-41876145)
[»] chr2 (2 HSPs)
chr2 (50-114)||(7962257-7962321)
chr2 (50-114)||(12793909-12793973)
[»] chr1 (1 HSPs)
chr1 (50-114)||(29579117-29579181)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 111 - 384
Target Start/End: Complemental strand, 55047345 - 55047068
Alignment:
Q  111 ttcaaatccttgtgatccttttgaagaaatattaataaacaaaacaacatcaattt----cgtttgatcatagaattacaaagaaatcaaagatcttaat 206  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    ||  ||||||||||||||||||||||||||||||||||||    
T  55047345 ttcaaatccttgtgatcctttcgaagaaatattaataaacaaaacaacatcaatttaaagcgcatgatcatagaattacaaagaaatcaaagatcttaat 55047246  T
Q  207 atatacacattaagaactttaaatcaacatgaacatatgcagcaacataactccacatagattcagttaatgtcatgatccttaaggatcctgtacctgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55047245 atatacacattaagaactttaaatcaacatgaacatatgcagcaacataactccacatagattcagttaatgtcatgatccttaaggatcctgtacctgc 55047146  T
Q  307 aaccaggaactctattgaaataattgctttctgttactgaacatgtttttggtagaaattcatttggacctctctgct 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55047145 aaccaggaactctattgaaataattgctttctgttactgaacatgtttttggtagaaattcatttggacctctttgct 55047068  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 41128336 - 41128260
Alignment:
Q  43 ggatccatggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtcagattcaaatcc 119  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||    
T  41128336 ggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttcaaatcc 41128260  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 55048478 - 55048411
Alignment:
Q  40 acaggatccatggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtc 107  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  55048478 acaggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtc 55048411  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 32116310 - 32116374
Alignment:
Q  50 tggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtcagattca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  32116310 tggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 32116374  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 55048246 - 55048201
Alignment:
Q  243 atgcagcaacataactccacatagattcagttaatgtcatgatcct 288  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  55048246 atgcagcaatataactccacatagagtcagtttatgtcatgatcct 55048201  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 55047417 - 55047388
Alignment:
Q  18 tatatgatcaaaacataacacaacaggatc 47  Q
    ||||||||||||||||||||||||||||||    
T  55047417 tatatgatcaaaacataacacaacaggatc 55047388  T

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Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 33863584 - 33863654
Alignment:
Q  50 tggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtcagattcaaatcct 120  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||    
T  33863584 tggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcacatcct 33863654  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 6775643 - 6775579
Alignment:
Q  50 tggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtcagattca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  6775643 tggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 6775579  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 6784745 - 6784681
Alignment:
Q  50 tggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtcagattca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  6784745 tggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 6784681  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 17491354 - 17491418
Alignment:
Q  50 tggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtcagattca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  17491354 tggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 17491418  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 18915714 - 18915778
Alignment:
Q  43 ggatccatggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtc 107  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18915714 ggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtc 18915778  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 34367141 - 34367077
Alignment:
Q  50 tggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtcagattca 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||    
T  34367141 tggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacatcaggttca 34367077  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 25345980 - 25346044
Alignment:
Q  43 ggatccatggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtc 107  Q
    |||||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||    
T  25345980 ggatccgtggcgcaatggtagcgcgtctgactccagatcaaaaggttgcgtgtttgattctcgtc 25346044  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 33161726 - 33161790
Alignment:
Q  50 tggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtcagattca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  33161726 tggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 33161790  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 41876145 - 41876081
Alignment:
Q  50 tggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtcagattca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||    
T  41876145 tggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcatgtcaggttca 41876081  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 7962321 - 7962257
Alignment:
Q  50 tggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtcagattca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  7962321 tggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 7962257  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 12793909 - 12793973
Alignment:
Q  50 tggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtcagattca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  12793909 tggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 12793973  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 29579181 - 29579117
Alignment:
Q  50 tggcgcaatggtagcgcgtctgactccatatcagaaggttgcgtgttcgattcacgtcagattca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  29579181 tggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 29579117  T

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