View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16306_low_8 (Length: 372)
Name: NF16306_low_8
Description: NF16306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16306_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 39982683 - 39982318
Alignment:
| Q |
1 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982683 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
39982584 |
T |
|
| Q |
101 |
gtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982583 |
gtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaa |
39982484 |
T |
|
| Q |
201 |
catgacacaaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatttccctca |
300 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982483 |
catgacaccaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatttccctca |
39982384 |
T |
|
| Q |
301 |
aatgtaggcctaagcttttggcttagcatttggctcaggtacttactttctccccttgtagtctct |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982383 |
aatgtaggcctaagcttttggcttagcatttggctcaggtacttactttctccccttgtagtctct |
39982318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 44898767 - 44898551
Alignment:
| Q |
1 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
100 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| | ||| ||||| || | |||||||||||||||||| ||||||||||||||||| |||||||| | |
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| T |
44898767 |
tcatcaaaaggaacagcaatgcctagcttggtcttgtccctaagccaggttacggtgtttcggcaaacaggtaataagataatggccatattcaatttga |
44898668 |
T |
|
| Q |
101 |
gtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaa |
200 |
Q |
| |
|
|||| ||||| || ||||| ||||| || ||||| || |||||||||| |||||||| | |||| ||||| |||| ||||| |||||||||| || | |
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| T |
44898667 |
gtgtctcagctgcacctttagccatacagacacaatggcccatcacttcatatgcagcttttcttctatactgcatgaatttgtaggcaaatagaccaca |
44898568 |
T |
|
| Q |
201 |
catgacacaaatccaca |
217 |
Q |
| |
|
||| |||| |||||||| |
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|
| T |
44898567 |
cataacaccaatccaca |
44898551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 44914681 - 44914329
Alignment:
| Q |
1 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
100 |
Q |
| |
|
||||||||||||||| | |||||| |||||||| ||||| ||||| |||||||||||||| |||||||| || |||||||| |||||||||||||| | |
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|
| T |
44914681 |
tcatcaaaaggaacagcaatgcctagtttggtcttgttcctaagccatgtgatggtgtttcgacaaacaggtaacaagataatagccatgttcaatttga |
44914582 |
T |
|
| Q |
101 |
gtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaa |
200 |
Q |
| |
|
|||| ||||| || ||||| |||||||||||||| || ||||| |||| ||| ||| | |||| || || |||| ||||| |||||||||| || | |
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|
| T |
44914581 |
gtgtctcagctgcacctttagccatgcacacacaatgacccattacttcataagcatcttttcttctgtactgcatgaatttgtaggcaaatagaccaca |
44914482 |
T |
|
| Q |
201 |
catgacacaaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatttccctca |
300 |
Q |
| |
|
||| |||| |||||| || | |||| ||| | |||| |||| || ||||| | ||||| ||| ||||||||||| | || || |||||| ||| |
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|
| T |
44914481 |
cataacaccaatccatagtaccaatatccaagttctttgccaattgtcctgcagaaagtaaatggcatctctatacctcttccgaacaggattgtattca |
44914382 |
T |
|
| Q |
301 |
aatgtaggcctaagcttttggcttagcatttggctcaggtacttactttctcc |
353 |
Q |
| |
|
||||| | |||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
44914381 |
tatgtacccttaagctttatgcttagcatttggctcaggtacttactatctcc |
44914329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 44885439 - 44885223
Alignment:
| Q |
1 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
100 |
Q |
| |
|
|||| ||||||||||| | ||||||||||||||| |||||||||| || | ||||||||||||||||| || ||||||| |||||||||||||| | |
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| T |
44885439 |
tcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaagataagagccatgttcaatttga |
44885340 |
T |
|
| Q |
101 |
gtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaa |
200 |
Q |
| |
|
|||| ||||| || ||||| |||||||| ||||| || |||||||| | ||| |||| | |||| | ||| ||||||||||| |||||||||| ||||| |
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|
| T |
44885339 |
gtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaatagacctaa |
44885240 |
T |
|
| Q |
201 |
catgacacaaatccaca |
217 |
Q |
| |
|
||| || | |||||||| |
|
|
| T |
44885239 |
cataactccaatccaca |
44885223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 46562142 - 46562263
Alignment:
| Q |
1 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
100 |
Q |
| |
|
|||||||| ||||||| | | |||| |||||||| | |||||||||||||||||||||| |||||||||| ||| || | |||||||| || || | |
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| T |
46562142 |
tcatcaaagggaacaacaactcctaatttggtcttgcttctgagccaagtgatggtgtttctacaaacaggcattaaaattaatgccatgttgaacttga |
46562241 |
T |
|
| Q |
101 |
gtgtttcagcagccccttttgc |
122 |
Q |
| |
|
| || |||||||| || ||||| |
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|
| T |
46562242 |
gagtctcagcagcaccctttgc |
46562263 |
T |
|
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