View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16307_high_10 (Length: 368)
Name: NF16307_high_10
Description: NF16307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16307_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 35881198 - 35880959
Alignment:
| Q |
4 |
atcagatagtggaattgatgtgataatcgttgtaatataaagcaagaaatcacgtacgtgtttacggcaagaaatgatatgataatcattttcaccgttg |
103 |
Q |
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| T |
35881198 |
atcagatagtggaattgaagtgataatcgttgtaaaagaaacgaagaaatgacgtacatgttgacggcaagaaatgatgtggtaatcattttcaccgttg |
35881099 |
T |
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| Q |
104 |
cgggaaagatcaaaaccgatgtgaacttgaccgccgttctcttcaacagctttgagaacagtgtcaaattcacgaggtggaaataggtgtcgcgatatga |
203 |
Q |
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| T |
35881098 |
cgggaaagatcaaaaccgatgtgaacttgaccgccgttctcttcaacagccttgagaacagtgtcaaattcatgaggtggaaataagtgtcgcgatatga |
35880999 |
T |
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| Q |
204 |
aaacgttaaacccgtcgaataacttcgacatcttcttctt |
243 |
Q |
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| T |
35880998 |
aaacgttaaacccgtcgaataacttcgacgtcttcatctt |
35880959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 35898895 - 35898822
Alignment:
| Q |
55 |
acgtacgtgtttacggcaagaaatgatatgataatcattttcaccgttgcgggaaagatcaaaaccgatgtgaa |
128 |
Q |
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|||||| || ||||||||||||||||||||| |||| |||||| |||| ||||| |||||| |||||||||| |
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| T |
35898895 |
acgtacatgattacggcaagaaatgatatgaaaatcgttttcagagttgtgggaaggatcaaccccgatgtgaa |
35898822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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