View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16307_high_13 (Length: 359)
Name: NF16307_high_13
Description: NF16307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16307_high_13 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 451040 - 451398
Alignment:
| Q |
12 |
atgagtttgattatctattttcttgtttgctttattgtaaaggaaattgtgacaaaaatgcatttatgagtaacttatctatgagttaatctgtcctgta |
111 |
Q |
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| T |
451040 |
atgagttcgattatctagtttcttgtttgctttattgtaaaggaaattgtgacaaaaatgcatttatgagtaacttatctatgagttaatctgtcctgta |
451139 |
T |
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| Q |
112 |
tttatttcttgcttacttaaattaggttatgataactcatcctttattaacttt-gtatctatttgggagttttcttc----------aatcaagtactt |
200 |
Q |
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| T |
451140 |
tttatttcttgcttacttaaattaggttatgataactcatcctttattaactttggtatctatttgggagttttcttcattgtgcactaatcaagtactt |
451239 |
T |
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| Q |
201 |
attacttaatgtgtaaaccttagttttagagatagaaaatcaatttatcaatttactgttataaattttccatgacattatttattaggatttgaatctt |
300 |
Q |
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| T |
451240 |
attacttaatgtgtaaaccttagttttagagatagaaaatcaatttatcaatttacttttataaattttccatgacattatttattaggatttgaatctt |
451339 |
T |
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| Q |
301 |
ctcatttagatcctgacacaattttttgtttctttatataggacctagagaaagaaaga |
359 |
Q |
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| T |
451340 |
ctcatttagttcctgacacaattttttgtctctttatataggacctagagaaagaaaga |
451398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 200 - 335
Target Start/End: Complemental strand, 4432791 - 4432656
Alignment:
| Q |
200 |
tattacttaatgtgtaaaccttagttttagagatagaaaatcaatttatcaatttactgttataaattttccatgacattatttattaggatttgaatct |
299 |
Q |
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| T |
4432791 |
tattacttaatttgtagttctcagttttagagataaaaaatcaatttatcaatttacggttataaattttgctcgatattatttattaggatttggatct |
4432692 |
T |
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| Q |
300 |
tctcatttagatcctgacacaattttttgtttcttt |
335 |
Q |
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| T |
4432691 |
tctcatttagttcctaacaaaatgctttgttacttt |
4432656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 14493984 - 14494046
Alignment:
| Q |
247 |
atcaatttactgttataaattttccatgacattatttattaggatttgaatcttctcatttag |
309 |
Q |
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| T |
14493984 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttag |
14494046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 15458 - 15396
Alignment:
| Q |
247 |
atcaatttactgttataaattttccatgacattatttattaggatttgaatcttctcatttag |
309 |
Q |
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| T |
15458 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttag |
15396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 16101 - 16039
Alignment:
| Q |
247 |
atcaatttactgttataaattttccatgacattatttattaggatttgaatcttctcatttag |
309 |
Q |
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| T |
16101 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttag |
16039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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