View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16307_high_17 (Length: 331)

Name: NF16307_high_17
Description: NF16307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16307_high_17
NF16307_high_17
[»] chr6 (14 HSPs)
chr6 (2-320)||(31289542-31289867)
chr6 (2-218)||(26651948-26652170)
chr6 (2-218)||(26757916-26758138)
chr6 (232-319)||(27713873-27713960)
chr6 (232-318)||(26853949-26854035)
chr6 (249-320)||(26631744-26631815)
chr6 (249-320)||(26737719-26737790)
chr6 (232-319)||(26966390-26966477)
chr6 (241-320)||(27422333-27422412)
chr6 (64-169)||(27421298-27421403)
chr6 (232-320)||(26890735-26890823)
chr6 (232-320)||(27651967-27652055)
chr6 (97-174)||(26632634-26632711)
chr6 (97-174)||(26738610-26738687)
[»] chr8 (1 HSPs)
chr8 (241-322)||(29269748-29269829)
[»] scaffold0349 (1 HSPs)
scaffold0349 (232-319)||(17984-18071)
[»] scaffold0003 (2 HSPs)
scaffold0003 (241-320)||(64951-65030)
scaffold0003 (64-169)||(65960-66065)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 31289867 - 31289542
Alignment:
Q  2 caatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccatatctctgcactgccttcaata 101  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  31289867 caatcgagccggttaggaagtctatctcgtaaaagtctcatactaaacacattctttttttggcactgatgtgagccatatctctgcactgccttcaata 31289768  T
Q  102 attcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgttg-------tggcaaccatttatcaaca 194  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  31289767 attcatcattgaaatcattgggaaaatgcaaatatcacagatcttgataacaacctttcaccgagaatatgttgcactctctggcaaccatttatcaaca 31289668  T
Q  195 tccagtacaggttgctgcagctgtgtttttacacaagaaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccataca 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289667 tccagtacaggttgctgcagctgtgtttttacacaagaaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccataca 31289568  T
Q  295 gtgttgtttctgctacacaggttctg 320  Q
    ||||||||||||||||||||||||||    
T  31289567 gtgttgtttctgctacacaggttctg 31289542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 26652170 - 26651948
Alignment:
Q  2 caatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccata-tctctgcactgccttcaat 100  Q
    ||||||||| ||||| ||||||||||| |||| |||| || || |||||||||        |||| |||||||| ||||| |||||||||||||||||||    
T  26652170 caatcgagccggttatgaagtctatcttgtaagagtcccaaaccaaacacatt--ttttttggcaatgatgtgaaccataatctctgcactgccttcaat 26652073  T
Q  101 aattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgttg-------tggcaaccatttatcaac 193  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |||||       ||||||||||||||||||    
T  26652072 aattcatccttgaaatcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccgagaatctgttgcactctctggcaaccatttatcaac 26651973  T
Q  194 atccagtacaggttgctgcagctgt 218  Q
    ||||| |||||||| ||||||||||    
T  26651972 atccaatacaggtttctgcagctgt 26651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 26758138 - 26757916
Alignment:
Q  2 caatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccata-tctctgcactgccttcaat 100  Q
    ||||||||| ||||| ||||||||||| |||| |||| || || |||||||||        |||| |||||||| ||||| |||||||||||||||||||    
T  26758138 caatcgagccggttatgaagtctatcttgtaagagtcccaaaccaaacacatt--ttttttggcaatgatgtgaaccataatctctgcactgccttcaat 26758041  T
Q  101 aattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgttg-------tggcaaccatttatcaac 193  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |||||       ||||||||||||||||||    
T  26758040 aattcatccttgaaatcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccgagaatctgttgcactctctggcaaccatttatcaac 26757941  T
Q  194 atccagtacaggttgctgcagctgt 218  Q
    ||||| |||||||| ||||||||||    
T  26757940 atccaatacaggtttctgcagctgt 26757916  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 319
Target Start/End: Original strand, 27713873 - 27713960
Alignment:
Q  232 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct 319  Q
    |||||||  ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| |||||    
T  27713873 aaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 27713960  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 26854035 - 26853949
Alignment:
Q  232 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttc 318  Q
    |||||||  ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  26854035 aaactgacttggcagaaaattgtttttacacaagaataacttattaatcacaagagccatacagtgttgttgctgctacacaagttc 26853949  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 26631815 - 26631744
Alignment:
Q  249 aagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  26631815 aagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagttctg 26631744  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 26737790 - 26737719
Alignment:
Q  249 aagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  26737790 aagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagttctg 26737719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 26966477 - 26966390
Alignment:
Q  232 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct 319  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||    
T  26966477 aaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct 26966390  T

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Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 241 - 320
Target Start/End: Original strand, 27422333 - 27422412
Alignment:
Q  241 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 320  Q
    ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  27422333 tggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctactcaagttctg 27422412  T

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Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 27421298 - 27421403
Alignment:
Q  64 gcactgatgtgagccata-tctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcac 162  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||| |||||| |    
T  27421298 gcactgatgtgagccataatctatgcactgccttcaataattcatcgtcgaaatcatt-gaaaaacgcaaatttcacagctcttgataacatcctttctc 27421396  T
Q  163 cgagaat 169  Q
     ||||||    
T  27421397 tgagaat 27421403  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 26890823 - 26890735
Alignment:
Q  232 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 320  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||  ||||| ||||||    
T  26890823 aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctg 26890735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 27651967 - 27652055
Alignment:
Q  232 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 320  Q
    |||||||  ||||||| ||||||||||||||| ||||| |||||||||||||| ||  ||||||||||||| ||||||| || ||||||    
T  27651967 aaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgctgctacgcaagttctg 27652055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 26632711 - 26632634
Alignment:
Q  97 caataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgtt 174  Q
    |||||||||||||| |||||||| | |||||   |||| ||||   ||||||||||| ||||||||||||||| ||||    
T  26632711 caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtt 26632634  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 26738687 - 26738610
Alignment:
Q  97 caataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgtt 174  Q
    |||||||||||||| |||||||| | |||||   |||| ||||   ||||||||||| ||||||||||||||| ||||    
T  26738687 caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtt 26738610  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 29269748 - 29269829
Alignment:
Q  241 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctgct 322  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||    
T  29269748 tggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctgct 29269829  T

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Target: scaffold0349 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 18071 - 17984
Alignment:
Q  232 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct 319  Q
    |||||||  ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| |||||    
T  18071 aaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 17984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 241 - 320
Target Start/End: Complemental strand, 65030 - 64951
Alignment:
Q  241 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 320  Q
    ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  65030 tggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctactcaagttctg 64951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 66065 - 65960
Alignment:
Q  64 gcactgatgtgagccata-tctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcac 162  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||| |||||| |    
T  66065 gcactgatgtgagccataatctatgcactgccttcaataattcatcgtcgaaatcatt-gaaaaacgcaaatttcacagctcttgataacatcctttctc 65967  T
Q  163 cgagaat 169  Q
     ||||||    
T  65966 tgagaat 65960  T

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