View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16307_high_2 (Length: 453)
Name: NF16307_high_2
Description: NF16307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16307_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 47047552 - 47048003
Alignment:
| Q |
1 |
atcatcaattagaacaaggaagtaacaagaacaataataattctctgtttcgcagttatgtttctggaaaaagaacaacaaacttgttcagctggattga |
100 |
Q |
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| T |
47047552 |
atcatcaattagaacaaggtagtaacaagaacaataataattctctgtttcgcagttatgtttctggaaaaagaacaacaaacttgttcagctggattga |
47047651 |
T |
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| Q |
101 |
aaatccatctatggctgctgatgctgttgaaaatggatggtcaagatttgctttcactagctataaaagttacatgccatcgccatcaaagaaggttaca |
200 |
Q |
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| T |
47047652 |
aaatccatctatggctgctgatgctgttgaaaatggatggtcaagatttgctttcactagctataaaagttacatgccatcgccatcaaagaaggttaca |
47047751 |
T |
|
| Q |
201 |
ctgttaggatcatgtgcacctgtaggtgattatcgaagagaatcatctgaagctgagattagttgggaagtttcacgtggatcagatgagtttatgcaga |
300 |
Q |
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| T |
47047752 |
ctgttaggatcatgtgcacctgtaggtgattatcgaagagaatcatctgaagctgagattagttgggaagtttcacgtggatcagatgagtttatgcaga |
47047851 |
T |
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| Q |
301 |
aagttagattgaatcctggattaagaaaatctaatcaagttattcaaaataattctatggttacttctgttattagaacagctttaccattacctggtcc |
400 |
Q |
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| T |
47047852 |
aagttagattgaatcctggattaagaaaatctaatcaagttattcaaaataattctatggttacttctgttattagaacagctttaccattacctggtcc |
47047951 |
T |
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| Q |
401 |
tgttttaggaaactatgtttttccacaagaagcttattttgaaattacgatg |
452 |
Q |
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| T |
47047952 |
tgttttaggaaactatgtttttccacaagaagcttattttgaaattacgatg |
47048003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 16291702 - 16291603
Alignment:
| Q |
1 |
atcatcaattagaacaaggaagtaacaagaacaataataattctctgtttcgcagttatgtttctggaaaaagaacaacaaacttgttcagctggattga |
100 |
Q |
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| T |
16291702 |
atcatcaattagaacgaggtagtaacaataacaataat---tctctgttctgcagtaatgtttttggaaaaagaacaacaaatttgttcagctgggttga |
16291606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 5656330 - 5656251
Alignment:
| Q |
84 |
ttgttcagctggattgaaaatccatctatggctgctgatgctgttgaaaatggatggtcaagatttgctttcactagcta |
163 |
Q |
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| T |
5656330 |
ttgttcaactggaatgatcatccatatctagcttctgatgctatagaaaatggatggtcaagatttgctttcactagcta |
5656251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 5656018 - 5655966
Alignment:
| Q |
393 |
cctggtcctgttttaggaaactatgtttttccacaagaagcttattttgaaat |
445 |
Q |
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| T |
5656018 |
cctggtccttttttggggaaccatgcatttccacaagaagcttattttgaaat |
5655966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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