View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16307_high_23 (Length: 309)
Name: NF16307_high_23
Description: NF16307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16307_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 25 - 289
Target Start/End: Original strand, 16126697 - 16126943
Alignment:
| Q |
25 |
catcatcatcatcaaaaggattttggaaattttccactgaattattaaaagggtattcttgaattggtaattcaggtgaaatagtcatagaatttgatgg |
124 |
Q |
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| T |
16126697 |
catcatcatcatcaaaagggttttggaaattttccaatgaattattataagggtattcttgaattggtaattcatgtgaaatagtcatagaatt------ |
16126790 |
T |
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| Q |
125 |
catggtggaactagtttcatcatcagtcattgtctctgaccaaaagctttcatcaatttgaggcattgtcacaaatgagtcttcagggtcttcacaaatg |
224 |
Q |
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| T |
16126791 |
------------agtttcatcatcagttattgtctctgaccaaaagctttcatcaatttgaggcattgtcacaaatgagtcttcagggtcttcacaaatg |
16126878 |
T |
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| Q |
225 |
atgctattgtccaaattttttccttgtgatgaaaaatcactagaaaaagtgcaatttgatgatgt |
289 |
Q |
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| T |
16126879 |
atgctattgtccaaattttttccttgtgatgaaaaatcactagaaaaagtgcaatttgatgatgt |
16126943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 25 - 285
Target Start/End: Original strand, 16137787 - 16138038
Alignment:
| Q |
25 |
catcatcatcatcaaaaggattttggaaattttccactgaattattaaaagggtattcttgaattggtaattcaggtgaaatagtcatagaatttgatgg |
124 |
Q |
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| T |
16137787 |
catcatcattatcaaaagggttttgaaaattttccacggaattattaaaaatgcattgttgatctggtaaatcatttgaaactgtcatagaatttgatgg |
16137886 |
T |
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| Q |
125 |
catggtggaactagtttcatcatcagtcattgtctctgaccaaaagctttcatcaatttgaggcattgtcacaaatgagtcttcagggtcttcacaaatg |
224 |
Q |
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| T |
16137887 |
catggtggaactaatttcatcatcaattactgtctctgaccaaaagctttcatcaatttcaggcattgtcaccaatga---------gtcttcacaaatg |
16137977 |
T |
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| Q |
225 |
atgctattgtccaaattttttccttgtgatgaaaaatcactagaaaaagtgcaatttgatg |
285 |
Q |
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| T |
16137978 |
atgctattgtccaaatttttttcttgtgatgaaaaatcactagaaaaagtgcaatttgatg |
16138038 |
T |
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