View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16307_high_6 (Length: 377)
Name: NF16307_high_6
Description: NF16307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16307_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 166 - 357
Target Start/End: Complemental strand, 733123 - 732932
Alignment:
| Q |
166 |
tatgtgtagataaagcaaacctgatgaattggaggatacattgaattggtacaaacaggacattccaacaactcatgaacacttgtagcaggagcaatag |
265 |
Q |
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| T |
733123 |
tatgtgtagataaagcaaacctgatgaattggaggatacattgaattggtacaaacaggacattccaacaactcatgaacacttgtagcaggagcaatag |
733024 |
T |
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| Q |
266 |
cagtagaaccaataacaccatgattattgtttcctccactacgaggtttcaatgaagaaaactcagagtgatgatgatgttgttgatgatgt |
357 |
Q |
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| T |
733023 |
cagtagaaccaataacaccatgattattgtttcctccactacgaggttttaatgaagaaaactcagagtgatgatgatgttgttgatgatgt |
732932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 733268 - 733197
Alignment:
| Q |
21 |
ggacatcatcatcatcataagccccaaatcaactcaataacactacaaagcactaaaatctaccaaacaagt |
92 |
Q |
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| T |
733268 |
ggacatcctcatcatcataagccccaaatcaactcaataacactacaaagcattaaaatctaccaaacaagt |
733197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 9834231 - 9834159
Alignment:
| Q |
181 |
caaacctgatgaattggaggatacattgaattggtacaaacaggacattccaacaactcatgaacacttgtag |
253 |
Q |
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| T |
9834231 |
caaacctgatgaattggagggtacattgaattagtacaaacaggacattcaagaagctcatgaacactagtag |
9834159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 41635030 - 41635109
Alignment:
| Q |
184 |
acctgatgaattggaggatacattgaattggtacaaacaggacattccaacaactcatgaacacttgtagcaggagcaat |
263 |
Q |
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| T |
41635030 |
acctggtgaataggagggtacattgaattagtacaaacaggacattcaagcaattcatgaacactagttgcaggagcaat |
41635109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 48543349 - 48543398
Alignment:
| Q |
181 |
caaacctgatgaattggaggatacattgaattggtacaaacaggacattc |
230 |
Q |
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| T |
48543349 |
caaacctgatggattggagggtacattgaattggtgcaaaccggacattc |
48543398 |
T |
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