View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16307_low_1 (Length: 216)
Name: NF16307_low_1
Description: NF16307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16307_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 48411956 - 48412142
Alignment:
| Q |
18 |
aaatctcactttctccaacattccagaacccaatatccccgaatttgttacccgctgccaccatcttaacatcattggaagggcaaaaccgcatttgggt |
117 |
Q |
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| T |
48411956 |
aaatctcactttctccaacattccagaacccaatatcaccgaatttgttacccgctgccaccatcttaacatcattggaagggcaaaaccgcatttgggt |
48412055 |
T |
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| Q |
118 |
tatccttccgggaacaacacgtgcaatattttctggatccaaattcaaagattccaactcaagtgaacactcaattttcttcttctt |
204 |
Q |
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| T |
48412056 |
tatccttccgggaacaacacgtgcaatattttctggatccaaattcaaagattccaactcaagtgaacactcaattttcttcttctt |
48412142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 48418515 - 48418695
Alignment:
| Q |
22 |
ctcactttctccaacattccagaacccaatatccccgaatttgttacccgctgccaccatcttaacatcattggaagggcaaaaccgcatttgggttatc |
121 |
Q |
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| T |
48418515 |
ctcactttctccaacattccagaacccaatatccccgactctgttaccggctactaccatcttgaaatcattggaaggtaaaaatcgcaagtgagttatg |
48418614 |
T |
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| Q |
122 |
cttccg---ggaacaacacgtgcaatattttctggatccaaattcaaagattccaactcaagtgaacactcaattttcttc |
199 |
Q |
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| T |
48418615 |
ccgccgtcaggaacaacacgtgctatatttttacgatccaaagacaaagattccaactcaagtgaacactcaattttcttc |
48418695 |
T |
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