View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16308_high_2 (Length: 378)
Name: NF16308_high_2
Description: NF16308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16308_high_2 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 41718385 - 41718728
Alignment:
| Q |
16 |
tactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718385 |
tactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggttt |
41718484 |
T |
|
| Q |
115 |
ctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccactta |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41718485 |
ctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccactta |
41718584 |
T |
|
| Q |
215 |
gtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718585 |
gtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctt |
41718684 |
T |
|
| Q |
314 |
attttagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718685 |
attttagctgcgtgataatattttgttactctggtacctaacag |
41718728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 41723111 - 41723453
Alignment:
| Q |
16 |
tactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723111 |
tactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggttt |
41723210 |
T |
|
| Q |
115 |
ctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccactta |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41723211 |
ctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccactta |
41723310 |
T |
|
| Q |
215 |
gtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723311 |
gtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctt |
41723410 |
T |
|
| Q |
314 |
attttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723411 |
attttagctgcgtgataatattttgttactctggtacctaaca |
41723453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 34359934 - 34360273
Alignment:
| Q |
19 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggtttctc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| |||||| |
|
|
| T |
34359934 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttctc |
34360033 |
T |
|
| Q |
118 |
ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360034 |
ctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg |
34360133 |
T |
|
| Q |
218 |
aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360134 |
aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttctacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt |
34360233 |
T |
|
| Q |
317 |
ttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360234 |
ttagctgcgtgataatattttgttactctggtacctaaca |
34360273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 34352226 - 34352546
Alignment:
| Q |
19 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggtttctc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| |||||| |
|
|
| T |
34352226 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttctc |
34352325 |
T |
|
| Q |
118 |
ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352326 |
ctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg |
34352425 |
T |
|
| Q |
218 |
aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352426 |
aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt |
34352525 |
T |
|
| Q |
317 |
ttagctgcgtgataatatttt |
337 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34352526 |
ttagctgcgtgataatatttt |
34352546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 29585640 - 29585300
Alignment:
| Q |
19 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttct |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
29585640 |
tcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct |
29585541 |
T |
|
| Q |
117 |
cctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagt |
216 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29585540 |
cctagtttgtattagttagtattctcctatttataagagagagtggtaattgtactctctttgtagttagagagaggtcctgtaatttcttccacttagt |
29585441 |
T |
|
| Q |
217 |
gaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585440 |
gaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttat |
29585341 |
T |
|
| Q |
316 |
tttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
29585340 |
tttagctgcatgataatattttgttactctgatacctaaca |
29585300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 319
Target Start/End: Original strand, 6768370 - 6768501
Alignment:
| Q |
191 |
aggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttt---tccccttatttgttgaggggtttccacgtaaatattgtgt |
287 |
Q |
| |
|
||||| |||||||| ||||| | |||||||||||||| ||||| ||||| ||||| || | ||||| ||||||||||| | | || |||||||| |
|
|
| T |
6768370 |
aggtcatgtaatttattccattcggtgaaagttctctattcttggtccgtgatttttgtttctcattattatttgaggggtttacgcatagatattgtgc |
6768469 |
T |
|
| Q |
288 |
gttcagttcctcttttctcgtctcttatttta |
319 |
Q |
| |
|
||||| || |||||||| |||||||||||||| |
|
|
| T |
6768470 |
gttcaatttctcttttcccgtctcttatttta |
6768501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 48702163 - 48701820
Alignment:
| Q |
16 |
tactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702163 |
tactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggttt |
48702064 |
T |
|
| Q |
115 |
ctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccactta |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48702063 |
ctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccactta |
48701964 |
T |
|
| Q |
215 |
gtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701963 |
gtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctt |
48701864 |
T |
|
| Q |
314 |
attttagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701863 |
attttagctgcgtgataatattttgttactctggtacctaacag |
48701820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 21 - 357
Target Start/End: Original strand, 42265883 - 42266221
Alignment:
| Q |
21 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggtttctcct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42265883 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcct |
42265982 |
T |
|
| Q |
120 |
agtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42265983 |
agtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaa |
42266082 |
T |
|
| Q |
220 |
agttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttatttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266083 |
agttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttt |
42266182 |
T |
|
| Q |
319 |
agctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42266183 |
agctgcgtgataatattttgttactctggtatctaacag |
42266221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 21 - 357
Target Start/End: Original strand, 42270602 - 42270940
Alignment:
| Q |
21 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggtttctcct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42270602 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcct |
42270701 |
T |
|
| Q |
120 |
agtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270702 |
agtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaa |
42270801 |
T |
|
| Q |
220 |
agttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttatttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270802 |
agttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttt |
42270901 |
T |
|
| Q |
319 |
agctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42270902 |
agctgcgtgataatattttgttactctggtatctaacag |
42270940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 24520363 - 24520031
Alignment:
| Q |
20 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520363 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
24520264 |
T |
|
| Q |
119 |
tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtga |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520263 |
tagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtga |
24520164 |
T |
|
| Q |
219 |
aagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520163 |
aagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattt |
24520064 |
T |
|
| Q |
318 |
tagctgcgtgataatattttgttactctggtac |
350 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
24520063 |
tagttgcgtgataatattttgttactctggtac |
24520031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 48697474 - 48697131
Alignment:
| Q |
16 |
tactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697474 |
tactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggttt |
48697375 |
T |
|
| Q |
115 |
ctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccactta |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48697374 |
ctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccactta |
48697275 |
T |
|
| Q |
215 |
gtgaaagttctctactcttgccccgtggtt-ttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48697274 |
gtgaaagttctctactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctct |
48697175 |
T |
|
| Q |
313 |
tattttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697174 |
tattttagctgcgtgataatattttgttactctggtacctaaca |
48697131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 74 - 357
Target Start/End: Complemental strand, 30945761 - 30945476
Alignment:
| Q |
74 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtac |
171 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945761 |
gaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtac |
30945662 |
T |
|
| Q |
172 |
tctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttc |
271 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
30945661 |
tctccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtgatttttt-cccttatttgttgaggggtttc |
30945563 |
T |
|
| Q |
272 |
cacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30945562 |
cacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctgatacctaacag |
30945476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 74 - 357
Target Start/End: Complemental strand, 30950467 - 30950182
Alignment:
| Q |
74 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtac |
171 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950467 |
gaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtac |
30950368 |
T |
|
| Q |
172 |
tctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttc |
271 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30950367 |
tttccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-cccttatttgttgaggggtttc |
30950269 |
T |
|
| Q |
272 |
cacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950268 |
cacgtaaaatattgtgtgttcagttcctcttttctcttatcttattttagctgcgtgataatattttgttactctggtacctaacag |
30950182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 74 - 356
Target Start/End: Original strand, 10427323 - 10427597
Alignment:
| Q |
74 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
173 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
10427323 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctatttc-aagagagag-ggtaatttgtctc |
10427412 |
T |
|
| Q |
174 |
tccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
272 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10427413 |
tccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttatctactttttccccgtagttttttccccttatttgttgaggggtttcc |
10427512 |
T |
|
| Q |
273 |
acgtaaa-tattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
10427513 |
gcgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattctgttactctggtacctaaca |
10427597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 149 - 343
Target Start/End: Original strand, 48782850 - 48783031
Alignment:
| Q |
149 |
ataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt |
248 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||| | |||||||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
48782850 |
ataagagagagtggtaattgtactc--catgtatttagagagaggtcatctaatttcttccacttagtgaaagttctc---------cccatg--ttttt |
48782936 |
T |
|
| Q |
249 |
ccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttact |
343 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
48782937 |
ccctttatttgttgagaaatttccacgtaaatattgtgtgttcagttcctgttttctcgtttcttattttaatcgcgtgataatattttgatact |
48783031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 1979240 - 1979375
Alignment:
| Q |
92 |
aaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagaga |
191 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| ||| |||| |||||||| |||||||||||||||||||| | ||| ||||||| |||| ||||| |
|
|
| T |
1979240 |
aaatagtttcaaatgtgaggtttctcctggttagtgctagt----attctcctgtttataagagagagtggtaaatataccctccttgcattt--agaga |
1979333 |
T |
|
| Q |
192 |
ggtcctgtaatttcttccacttagtgaaagttctctactctt |
233 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||| ||||||||| |
|
|
| T |
1979334 |
ggtcgtgtaatttcttcctcttactgaaagttatctactctt |
1979375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 303
Target Start/End: Original strand, 17248015 - 17248112
Alignment:
| Q |
206 |
ttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctctttt |
303 |
Q |
| |
|
||||||||| |||||||||| ||||||| || |||||||||||||||||||| || |||| |||||| ||||||||||||| || |||| ||||||| |
|
|
| T |
17248015 |
ttccacttaatgaaagttctatactcttatccggtggttttttccccttatttattaagggatttccatgtaaatattgtgtatttagtttctctttt |
17248112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 1979567 - 1979604
Alignment:
| Q |
253 |
ttatttgttgaggggtttccacgtaaatattgtgtgtt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1979567 |
ttatttgttgaggggtttccacgtaaatattgtgtgtt |
1979604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 30165895 - 30165968
Alignment:
| Q |
272 |
cacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct |
345 |
Q |
| |
|
|||||||||||| |||||||| ||| | ||||||| | ||||||||||| || |||||| |||||||||||||| |
|
|
| T |
30165895 |
cacgtaaatattatgtgttcaattcattttttctcatatcttattttagttgtgtgatattattttgttactct |
30165968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 354
Target Start/End: Complemental strand, 36615442 - 36615361
Alignment:
| Q |
273 |
acgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa |
354 |
Q |
| |
|
||||||||| ||| ||||| ||| |||||||||| | |||||||||| ||| | ||||||||||| ||||||| |||||||| |
|
|
| T |
36615442 |
acgtaaataatgtatgttcggtttctcttttctcatatcttattttaactgtgcgataatattttattactctagtacctaa |
36615361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 5823613 - 5823274
Alignment:
| Q |
20 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823613 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
5823514 |
T |
|
| Q |
119 |
tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtga |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823513 |
tagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtga |
5823414 |
T |
|
| Q |
219 |
aagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823413 |
aagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattt |
5823314 |
T |
|
| Q |
318 |
tagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823313 |
tagctgcgtgataatattttgttactctggtacctaacag |
5823274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 5818852 - 5818513
Alignment:
| Q |
19 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818852 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc |
5818753 |
T |
|
| Q |
118 |
ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818752 |
ctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg |
5818653 |
T |
|
| Q |
218 |
aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818652 |
aaagttctctactcttgccccgtggttttttccccttattagttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt |
5818553 |
T |
|
| Q |
317 |
ttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818552 |
ttagttgcgtgataatattttgttactctggtacctaaca |
5818513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 65 - 356
Target Start/End: Original strand, 54545906 - 54546200
Alignment:
| Q |
65 |
atagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtg |
161 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54545906 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
54546005 |
T |
|
| Q |
162 |
gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
261 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
54546006 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcatccacttagtgaaagttctctactctagccccgtggttttttccccttatttgtt |
54546105 |
T |
|
| Q |
262 |
gaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54546106 |
gaggggtttccacgtaaatattgtatgttcagttcctcttttctcatctcttattttagctgcgtgataatattttgttactctggtacctaaca |
54546200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 2817593 - 2817262
Alignment:
| Q |
16 |
tactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2817593 |
tactcatcccaaatcagtaacaacacaagaacaagtaaaacttgtttagggtaatgagagaaaaaatatagagaggaaaaatagtttctcct-------- |
2817502 |
T |
|
| Q |
114 |
tctcctagtttgtgttagtttgtattctcctatttataagagagag--tggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac |
211 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
2817501 |
------agtttgtattagttagtattctcctatttataagagagagagtggtgattgtactctccttgtatttagagagagttcttgtaatttcttccac |
2817408 |
T |
|
| Q |
212 |
ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcgtct |
310 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
2817407 |
ttagtgagagttctttactcttgccctgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttct |
2817309 |
T |
|
| Q |
311 |
cttattttagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817308 |
cttattttagctgcgtgataatattttgttactctggtacctaacag |
2817262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 204 - 356
Target Start/End: Complemental strand, 24659287 - 24659136
Alignment:
| Q |
204 |
tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaa-tattgtgtgttcagttcctcttt |
302 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
24659287 |
tcttccacttagtgaaagttct--actcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatgttgtgtgttcagttcctcttt |
24659190 |
T |
|
| Q |
303 |
tctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
24659189 |
tctcatctcttattttagctgtgtgataatattttattactctggtacctaaca |
24659136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 4579254 - 4579360
Alignment:
| Q |
243 |
ttttttccccttatttgttgaggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtta |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4579254 |
ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgtta |
4579353 |
T |
|
| Q |
342 |
ctctggt |
348 |
Q |
| |
|
||||||| |
|
|
| T |
4579354 |
ctctggt |
4579360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 171 - 342
Target Start/End: Complemental strand, 31204950 - 31204781
Alignment:
| Q |
171 |
ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc-ccgtggttttttccccttatttgttgaggggtt |
269 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| | ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
31204950 |
ctctccttatatttagagag--gttttgtaatttttcccacttagtgaaagttctctactattgcctccgtgattttttcctcttatttgttgaggggtt |
31204853 |
T |
|
| Q |
270 |
tccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac |
342 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || |||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
31204852 |
tccacgtaaatattgtgagttcagttcctctttt-tcatctcttcttttaactgcgtgctaatattttgttac |
31204781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 35977103 - 35977258
Alignment:
| Q |
162 |
gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttc-tctactcttgccccgtggttttttccccttatttgt |
260 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||| || | |||||||||| ||| |||||||| ||| ||| |
|
|
| T |
35977103 |
gtaattgttctctccttgtatttagagagaagtcttgtaattttttccacttagtgaaaactcttttactcttgccaagtgagtttttccc--tatatgt |
35977200 |
T |
|
| Q |
261 |
tgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttatttt |
318 |
Q |
| |
|
||| || ||| ||||||||||||| |||||| || |||||||||| |||||||||| |
|
|
| T |
35977201 |
tgatggttttttacgtaaatattgtttgttcaatttctcttttctcacctcttatttt |
35977258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 24671293 - 24671173
Alignment:
| Q |
74 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
173 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
24671293 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctattt-caagagagag-ggtaatttgtctc |
24671204 |
T |
|
| Q |
174 |
tccttgtatttagagagaggtcctgtaattt |
204 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |
|
|
| T |
24671203 |
tccttgtatttagagagaagtcttgtaattt |
24671173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 4579134 - 4579241
Alignment:
| Q |
74 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
173 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||| | ||||||| ||||||| ||| |
|
|
| T |
4579134 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcatag--------agttagtattctcctattt-cacgagagag-ggtaatttgtctc |
4579223 |
T |
|
| Q |
174 |
tccttgtatttagagaga |
191 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4579224 |
tccttgtatttagagaga |
4579241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 342
Target Start/End: Original strand, 36420054 - 36420220
Alignment:
| Q |
171 |
ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt |
270 |
Q |
| |
|
||||| ||||||||||||| || |||||||||| | |||||| || ||| |||||| ||||||||| || |||| | | ||||||||| | ||| |
|
|
| T |
36420054 |
ctctcattgtatttagaga----tcttgtaatttctccaacttagcaaatgttttctacttttgccccgtagtctttttctgt-atttgttgaaagattt |
36420148 |
T |
|
| Q |
271 |
ccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac |
342 |
Q |
| |
|
||||||||||||| ||||| |||| | ||||||| |||| ||||||| || | ||||||||||||||||| |
|
|
| T |
36420149 |
ccacgtaaatattatgtgtgttgttctttttttctcatctcatattttaactacatgataatattttgttac |
36420220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 25877086 - 25877131
Alignment:
| Q |
312 |
ttattttagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
25877086 |
ttattttagttgcgtaataatattatgttattctggtacctaacag |
25877131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 9444430 - 9444091
Alignment:
| Q |
20 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444430 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
9444331 |
T |
|
| Q |
119 |
tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtga |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444330 |
tagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtga |
9444231 |
T |
|
| Q |
219 |
aagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444230 |
aagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattt |
9444131 |
T |
|
| Q |
318 |
tagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444130 |
tagctgcgtgataatattttgttactctggtacctaacag |
9444091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 356
Target Start/End: Complemental strand, 9439710 - 9439372
Alignment:
| Q |
20 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439710 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
9439611 |
T |
|
| Q |
119 |
tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtga |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439610 |
tagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtga |
9439511 |
T |
|
| Q |
219 |
aagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439510 |
aagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattt |
9439411 |
T |
|
| Q |
318 |
tagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439410 |
tagctgcgtgataatattttgttactctggtacctaaca |
9439372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 4799315 - 4799371
Alignment:
| Q |
283 |
tgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgt |
339 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
4799315 |
tgtgtgttcaatttctcttttctcatctcttattttagcagtgtgataatattttgt |
4799371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 4844870 - 4844944
Alignment:
| Q |
284 |
gtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacaga |
358 |
Q |
| |
|
||||||||| ||| |||| |||| |||||||||| | |||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
4844870 |
gtgtgttcaattcttcttatctcaactcttatttttacagcgtgataatgttttgtttctcttgtacctaacaga |
4844944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 26976470 - 26976131
Alignment:
| Q |
19 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976470 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc |
26976371 |
T |
|
| Q |
118 |
ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976370 |
ctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg |
26976271 |
T |
|
| Q |
218 |
aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttatt |
316 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976270 |
aaagttctctactcttgccccttggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt |
26976171 |
T |
|
| Q |
317 |
ttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976170 |
ttagctgcgtgataatattttgttactctggtacctaaca |
26976131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 356
Target Start/End: Original strand, 1234680 - 1235018
Alignment:
| Q |
20 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggtttctcc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234680 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
1234779 |
T |
|
| Q |
119 |
tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtga |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234780 |
tagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtga |
1234879 |
T |
|
| Q |
219 |
aagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234880 |
aagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattt |
1234979 |
T |
|
| Q |
318 |
tagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234980 |
tagctgcgtgataatattttgttactctggtacctaaca |
1235018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 21 - 356
Target Start/End: Complemental strand, 27874327 - 27873990
Alignment:
| Q |
21 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27874327 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcct |
27874228 |
T |
|
| Q |
120 |
agtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874227 |
agtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaa |
27874128 |
T |
|
| Q |
220 |
agttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttatttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27874127 |
agttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttatttt |
27874028 |
T |
|
| Q |
319 |
agctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874027 |
agatgcgtgataatattttgttactctggtacctaaca |
27873990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 74 - 357
Target Start/End: Complemental strand, 27878994 - 27878708
Alignment:
| Q |
74 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtac |
171 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878994 |
gaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtac |
27878895 |
T |
|
| Q |
172 |
tctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878894 |
tctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttc |
27878795 |
T |
|
| Q |
272 |
cacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878794 |
cacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
27878708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 92 - 357
Target Start/End: Original strand, 30986563 - 30986830
Alignment:
| Q |
92 |
aaatagtttctcctg-tgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag |
190 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||| ||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30986563 |
aaatagtttctcctcatgaggtttctcctaggtagtgtcagt----attcttctatttacaagagagagtggtaattgtactctccttgcatttagagag |
30986658 |
T |
|
| Q |
191 |
aggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtgg--ttttttccccttatttgttgagggg---tttccacgtaaatattgt |
285 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30986659 |
aggtcctgcaatttcttccacttagtgaaagttctctactcttgccccgtggttttttttttccttatttgttgaggggtactttccacgtaaatattgt |
30986758 |
T |
|
| Q |
286 |
gtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
30986759 |
gcgttcagttcctcttttctcgtctcttattttagctacgtgataatattttgttactctgatacctaacag |
30986830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 74 - 356
Target Start/End: Original strand, 18967920 - 18968194
Alignment:
| Q |
74 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
173 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||| | ||||||| | ||||| ||| |
|
|
| T |
18967920 |
gaaaaatataaagaggaaatatagtttctcttgtgaggtttctcctagt--------gttagtattctcctatttc-atgagagag-gctaatttgtctc |
18968009 |
T |
|
| Q |
174 |
tccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
272 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18968010 |
tccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
18968109 |
T |
|
| Q |
273 |
acgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18968110 |
acgtaaaatattatgtattcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
18968194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 75 - 310
Target Start/End: Original strand, 30966689 - 30966923
Alignment:
| Q |
75 |
aaaaatatagagaggaa-aaatagtttctcct-gtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtact |
172 |
Q |
| |
|
|||||||||||||| || ||||||||||| || |||||||||||||||| | | | ||| ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
30966689 |
aaaaatatagagagaaagaaatagtttctacttgtgaggtttctcctaggtagcctcagt----attcttctatttacaagagagagtggtaattgtact |
30966784 |
T |
|
| Q |
173 |
ctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttc |
271 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||| ||||||| |
|
|
| T |
30966785 |
ctccttgcatttagagagaggttctgcaatttcttccacttagtgaaagttctctactcttgccccgtgattttatttcccttatttgttgatgggtttc |
30966884 |
T |
|
| Q |
272 |
cacgtaaatattgtgtgttcagttcctcttttctcgtct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30966885 |
cacgtaaatattgtgtgttcagttcctcttttctcgtct |
30966923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 166 - 351
Target Start/End: Original strand, 21966677 - 21966860
Alignment:
| Q |
166 |
ttgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgagg |
265 |
Q |
| |
|
|||||||||| ||| | ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| | | |||||||| |||||| |||||| |
|
|
| T |
21966677 |
ttgtactctctttgaaattagagagaggtcttataatttcttccatttagtgaaagttctctactcttgccccat-gatttttccctttatttattgagg |
21966775 |
T |
|
| Q |
266 |
ggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc |
351 |
Q |
| |
|
||||||||| |||||||| | |||| ||||||||||||||| | | ||| ||||||||||||||||| ||| |||||| ||||||| |
|
|
| T |
21966776 |
ggtttccacataaatattttatgtttagttcctcttttctcatatgtta-tttagctgcgtgataatgtttcgttactttggtacc |
21966860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 337
Target Start/End: Complemental strand, 23012667 - 23012520
Alignment:
| Q |
189 |
agaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtg |
288 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| ||| | |||||| || | ||||||||||||||| |||||| |
|
|
| T |
23012667 |
agaggtcttgaaatttctctcacttagtgaaagttctctactcttgccca-tggtttttccccttaatttgt-gacgagtttccacgtaaataatgtgtg |
23012570 |
T |
|
| Q |
289 |
ttcagttcctctttt-ctcgtctcttattttagctgcgtgataatatttt |
337 |
Q |
| |
|
|||| ||| |||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
23012569 |
ttcaattcttctttttctcgtctcttattttagttgcgtgataatatttt |
23012520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 30967674 - 30967726
Alignment:
| Q |
305 |
tcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30967674 |
tcgtctcttattttagctgcttgataatattttgttactctggtacctaacag |
30967726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 6174333 - 6174273
Alignment:
| Q |
64 |
gatagtgagagaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagttt |
124 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||| | ||| |||| ||||||| |
|
|
| T |
6174333 |
gatagtgagagaaaaatatagaaaggaaatatagtttctcctataaggattcttctagttt |
6174273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 5198997 - 5198664
Alignment:
| Q |
16 |
tactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198997 |
tactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggttt |
5198898 |
T |
|
| Q |
115 |
ctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccactta |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5198897 |
ctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccactta |
5198798 |
T |
|
| Q |
215 |
gtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198797 |
gtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctt |
5198698 |
T |
|
| Q |
314 |
attttagctgcgtgataatattttgttactctgg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5198697 |
attttagctgcgtgataatattttgttactctgg |
5198664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 74 - 345
Target Start/End: Original strand, 15602911 - 15603183
Alignment:
| Q |
74 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
173 |
Q |
| |
|
|||||||||||| || |||| ||| || | || ||||||||||| |||| ||||||||| ||||||||||||||| |||| ||| |||||||||||| | |
|
|
| T |
15602911 |
gaaaaatatagaaagaaaaattagatttttctatgaggtttctcttagtaagtgttagttagtattctcctatttacaagatagaatggtaattgtacac |
15603010 |
T |
|
| Q |
174 |
tccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcca |
273 |
Q |
| |
|
||| || ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15603011 |
tccatgcatttagagagaggtcttgtaatttcttctacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcca |
15603110 |
T |
|
| Q |
274 |
cgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct |
345 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| |
|
|
| T |
15603111 |
cgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttcaattgcgtgataatattttcttactct |
15603183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 194 - 357
Target Start/End: Original strand, 825632 - 825797
Alignment:
| Q |
194 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-ccccttatttgttgaggggtttccacgtaaa-tattgtgtgttc |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
825632 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtgttc |
825731 |
T |
|
| Q |
292 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825732 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
825797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 89 - 349
Target Start/End: Original strand, 28715815 - 28716070
Alignment:
| Q |
89 |
gaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagag |
188 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| | |||||||| ||||||||||||||| || | ||||||||||||||||||||| |||||||| |
|
|
| T |
28715815 |
gaaaaatagtttctcttgtaaggtttctcctaggtagtgttagt----attctcctatttataggaaacggtggtaattgtactctccttgcatttagag |
28715910 |
T |
|
| Q |
189 |
agaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtg |
288 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||| |||| | |||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28715911 |
agatgtcctgtaatttcttccactttgtgaaagttctctattcttctcttgtggtttt-tccccttatttaatgaggggtttccacgtaaatattgtgtg |
28716009 |
T |
|
| Q |
289 |
ttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggta |
349 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
28716010 |
ttcaattcctcttttgtcgtctcttattttaaatgtgtgataatattttgttactctggta |
28716070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 194 - 356
Target Start/End: Original strand, 830288 - 830452
Alignment:
| Q |
194 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-ccccttatttgttgaggggtttccacgtaaa-tattgtgtgttc |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
830288 |
tcctgtaatttcttccacttagtgaaagttctccactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
830387 |
T |
|
| Q |
292 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
830388 |
agttcctcttttctcgtctcttattttaactgcgtgataatattttgttactctggtacctaaca |
830452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 78 - 347
Target Start/End: Complemental strand, 30397179 - 30396920
Alignment:
| Q |
78 |
aatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctcct |
177 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||| || | |||| ||||||| ||||||| |
|
|
| T |
30397179 |
aatatagagaggaaatatagtttctcctgtgagatttctcctagt--------gttaatattctcctatttc-aacatagag-ggtaatttgtctctcct |
30397090 |
T |
|
| Q |
178 |
tgtatttagagagaggtcctgtaatttcttccacttagtgaaa-gttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt |
276 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||||||||||||||||||||| ||| |
|
|
| T |
30397089 |
tgtatatagaaagaggtcttgtaatttcttccacttagtgaaaagttctctactctcgccctgtgatttttttcccttatttgttgaggggtttcaacga |
30396990 |
T |
|
| Q |
277 |
aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgg |
347 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30396989 |
aaatat-gtgtgttcagttcgtcttttctcgtctcttattttagctgcgtgataatattttgctactctgg |
30396920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 137 - 287
Target Start/End: Complemental strand, 13844014 - 13843865
Alignment:
| Q |
137 |
attctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc |
236 |
Q |
| |
|
|||||||||||| ||| | |||||||||||| || ||| |||||||||| | || ||||||||||||||||||||||| ||||| |||| |||| || | |
|
|
| T |
13844014 |
attctcctatttttaaaatagagtggtaattttattcttcttgtatttataaaggggtcctgtaatttcttccacttaatgaaaattctatacttttaac |
13843915 |
T |
|
| Q |
237 |
ccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgt |
287 |
Q |
| |
|
| | |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13843914 |
ctat-aatttttctccttatttgttgaggggtttccacgtaaatattgtgt |
13843865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 356
Target Start/End: Complemental strand, 13840456 - 13840240
Alignment:
| Q |
135 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
234 |
Q |
| |
|
||||||| ||||| ||||||||| | ||||||||||||||||| ||||||||||||||| |||||||| || |||| || ||| || |||||||||| |
|
|
| T |
13840456 |
gtattcttttatttttaagagagaattgtaattgtactctccttatatttagagagaggttttgtaattt-ttttacttggtaaaaattttctactcttg |
13840358 |
T |
|
| Q |
235 |
ccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatat |
334 |
Q |
| |
|
| || || |||| |||||| |||||||||| || || |||||||| ||||||| ||||||| |||||| ||| ||||| || | ||||||||||| |
|
|
| T |
13840357 |
ctccatg--ttttcccccttgtttgttgaggaattctcatgtaaatat--tgtgttcggttcctcctttctcatcttttattataattacgtgataatat |
13840262 |
T |
|
| Q |
335 |
tttgttactctggtacctaaca |
356 |
Q |
| |
|
||||||| ||||||||| |||| |
|
|
| T |
13840261 |
tttgttattctggtacccaaca |
13840240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 356
Target Start/End: Complemental strand, 31593068 - 31592910
Alignment:
| Q |
197 |
tgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaat-attgtgtgttcagtt |
295 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| | |||||||||| | |||||| ||||| | ||||||||||||| ||||| |||| ||| |
|
|
| T |
31593068 |
tgtaatttctttcggttagtgaaagttctctactcttatct-gtggttttttttc-ttatttattgagagatttccacgtaaattattgtatgttatgtt |
31592971 |
T |
|
| Q |
296 |
cctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||| ||||||| || |||| |||| |
|
|
| T |
31592970 |
cctcttttctcgtctcttattctatctgtgtgataatattatgttactttgatacccaaca |
31592910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 262
Target Start/End: Original strand, 8004167 - 8004292
Alignment:
| Q |
135 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
234 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||| ||||| |||||||| | |||||||||||| | |||||||||| |||| || | |
|
|
| T |
8004167 |
gtattctcctatttataagagagagtg-taattgtactcttcttacatttaaagagaggttttataatttcttccattcagtgaaagttttctagtcata |
8004265 |
T |
|
| Q |
235 |
ccccgtggttttttccccttatttgttg |
262 |
Q |
| |
|
|||||| | ||||||| ||||||||||| |
|
|
| T |
8004266 |
ccccgttg-tttttcctcttatttgttg |
8004292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 830209 - 830291
Alignment:
| Q |
65 |
atagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgtta--gtttgtattctcct |
144 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
830209 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcct |
830291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 825553 - 825635
Alignment:
| Q |
65 |
atagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgtta--gtttgtattctcct |
144 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||||||||| |||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
825553 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgcgaggtttctcctaggtagtgttagtgtttgtattctcct |
825635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 336
Target Start/End: Complemental strand, 12175881 - 12175768
Alignment:
| Q |
222 |
ttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
321 |
Q |
| |
|
||||||||||||| || | ||||||||| |||||| ||||| |||||||| |||||||||||||||| || || |||| || ||| ||||||||| |
|
|
| T |
12175881 |
ttctctactcttgtccaattgttttttcca-ttatttattgagatgtttccacaaaaatattgtgtgttcaatttcttttttatcatcttttattttagt |
12175783 |
T |
|
| Q |
322 |
tgcgtgataatattt |
336 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12175782 |
tgcgtgataatattt |
12175768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 42117769 - 42117876
Alignment:
| Q |
187 |
agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtg |
286 |
Q |
| |
|
||||||||| | |||||||| | ||| |||||||| |||||| ||| | ||||||||| |||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
42117769 |
agagaggtcttataatttctctcgtttaatgaaagttatctacttttgtctcgtggtttt-tccccttattaattgagaggtttctacgtaaatattgta |
42117867 |
T |
|
| Q |
287 |
tgttcagtt |
295 |
Q |
| |
|
||||||||| |
|
|
| T |
42117868 |
tgttcagtt |
42117876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 9358207 - 9358158
Alignment:
| Q |
292 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgtta |
341 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||| ||||||||| |||| |
|
|
| T |
9358207 |
agttcttcttttctcgtctgttgttttagctgcgtaataatatttggtta |
9358158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 74 - 351
Target Start/End: Complemental strand, 16183905 - 16183636
Alignment:
| Q |
74 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
173 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
16183905 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctatttc-aagagagag-ggtaatttgtctc |
16183816 |
T |
|
| Q |
174 |
tccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
272 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16183815 |
tccttgtatttagagagaggtcttgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
16183716 |
T |
|
| Q |
273 |
acgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc |
351 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16183715 |
acgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc |
16183636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 66 - 356
Target Start/End: Original strand, 30235043 - 30235339
Alignment:
| Q |
66 |
tagtgagag-aaaaatatagagaggaaaaatagtttctcctg-tgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtg |
161 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||||| ||||||||||| || | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30235043 |
tagtgagaggaaaaatatagagagaaaaattagtttctccttatgaggtttctcttacgtagtgttagtgtttgtattctcctatttataagagagagtg |
30235142 |
T |
|
| Q |
162 |
gtaattgtactctccttgtatttag-agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttg |
259 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||||||||||||||| | ||| |||||||| ||||||||| ||||||||||| ||||||||||| | |
|
|
| T |
30235143 |
gtaattgtactctccttataaataggagagaggtcctgtaatttcttctagttattgaaagttttctactcttatcccgtggtttttttccccttattcg |
30235242 |
T |
|
| Q |
260 |
ttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| || ||||||||||| |||||||||||| |||| |
|
|
| T |
30235243 |
ttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcattttttattttagctgtgtaataatattttgctactctggtacccaaca |
30235339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 135 - 357
Target Start/End: Complemental strand, 8140183 - 8139963
Alignment:
| Q |
135 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
234 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||| | |||||||||||||| |||||||||| |||| |||| |
|
|
| T |
8140183 |
gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtattaagagagaggtcttataatttcttccactgagtgaaagttttctaatctta |
8140086 |
T |
|
| Q |
235 |
ccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatat |
334 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
8140085 |
ccccatggttttctccccttatttgttgaggggtttccacataaatattgtgcgttcagtttctcttttctcatctcttattttagctgtgtgataatat |
8139986 |
T |
|
| Q |
335 |
tttgttactctggtacctaacag |
357 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
8139985 |
tttgttactctggtacccaacag |
8139963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 171 - 357
Target Start/End: Complemental strand, 8138645 - 8138459
Alignment:
| Q |
171 |
ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt |
270 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||| |||||| |||||||| |
|
|
| T |
8138645 |
ctctccttgtatttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttgcctcgtggttttctccccttgtttgttaaggggttt |
8138546 |
T |
|
| Q |
271 |
ccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
357 |
Q |
| |
|
|||| ||| || |||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||| |
|
|
| T |
8138545 |
ccacataattactgtgtgttaagtttttcttttctcgtctcttattttagctgcgtgataatactttgatactctgctacccaacag |
8138459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 343
Target Start/End: Complemental strand, 5102749 - 5102606
Alignment:
| Q |
199 |
taatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcct |
298 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||| || ||| |||||||||||||||||||| |||||| || ||||||||| ||| || ||| ||| |
|
|
| T |
5102749 |
taatttctcccacttagtaaaagttatctactcttgctccatgg-tttttccccttatttgttga-gggttttcatgtaaatattatgtatttagtccct |
5102652 |
T |
|
| Q |
299 |
c-ttttctcgtctcttattttagctgcgtgataatattttgttact |
343 |
Q |
| |
|
| ||||||| ||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
5102651 |
ctttttctcatcttttattttagttgagtgataatattttgttact |
5102606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 36528529 - 36528415
Alignment:
| Q |
242 |
gttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtta |
341 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||| || || ||||||| |
|
|
| T |
36528529 |
gttttttttccttattcgtggaggggtttccacgtaaatattgtgtgttcaattcctctattctcatctcttattttagttgcgtaattttactttgtta |
36528430 |
T |
|
| Q |
342 |
ctctggtacctaaca |
356 |
Q |
| |
|
||||| |||| |||| |
|
|
| T |
36528429 |
ctctgatacccaaca |
36528415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 74 - 356
Target Start/End: Complemental strand, 27500 - 27226
Alignment:
| Q |
74 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
173 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||| |||||||| |||||||| ||| |
|
|
| T |
27500 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattcacctatttc-aagagaga-tggtaatttgtctc |
27411 |
T |
|
| Q |
174 |
tccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
272 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27410 |
tccttgtatttagagagaagtattgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
27311 |
T |
|
| Q |
273 |
acgtaaa-tattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27310 |
acgtaaagtattgtgtgttcagtttctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
27226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 74 - 356
Target Start/End: Original strand, 46191274 - 46191546
Alignment:
| Q |
74 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
173 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
46191274 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctatttc-aagagagag-ggtaatttgtctc |
46191363 |
T |
|
| Q |
174 |
tccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
272 |
Q |
| |
|
||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46191364 |
tccttctatttagagagaagtcttgtaattgtcttccacttagtgaaagttctctactcttgtcccgtggttttttccccttatttgttgaggggtttcc |
46191463 |
T |
|
| Q |
273 |
acgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
46191464 |
acgtaaa-atattgtgttcagttcctcttttctcgtctcttattttagctgcatgataatattttgttactctggttcctaaca |
46191546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 171 - 351
Target Start/End: Complemental strand, 30697300 - 30697120
Alignment:
| Q |
171 |
ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt |
270 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
30697300 |
ctctccttgtatttagaaagaggtcttgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttccccttatttgttgaggggttt |
30697201 |
T |
|
| Q |
271 |
ccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc |
351 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30697200 |
ccacgtaaatattttgtgttaagttcctcttttctcgtctcttatgttagctgcgtgataatattttgttactctagtacc |
30697120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 171 - 356
Target Start/End: Original strand, 4130215 - 4130401
Alignment:
| Q |
171 |
ctctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt |
269 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
4130215 |
ctctccttgtatttagagagaagtcttgtaattatcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgagggatt |
4130314 |
T |
|
| Q |
270 |
tccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
356 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
4130315 |
tccacgtaaattttgtgtgttcagttcctcttttctcgtcacttattttagttgcgtgataatattttgttactcaagtacctaaca |
4130401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 356
Target Start/End: Original strand, 364683 - 364786
Alignment:
| Q |
253 |
ttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacct |
352 |
Q |
| |
|
||||| ||| ||||| ||| |||||||||||||||| || ||||| ||||||| ||| |||||||| || ||||| |||||| ||||||| ||||| |
|
|
| T |
364683 |
ttattggttaaggggattcaacgtaaatattgtgtggtcgattccttttttctcatctattattttaattgtatgatattattttattactctcgtacca |
364782 |
T |
|
| Q |
353 |
aaca |
356 |
Q |
| |
|
|||| |
|
|
| T |
364783 |
aaca |
364786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 30674865 - 30674787
Alignment:
| Q |
135 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttag |
215 |
Q |
| |
|
||||||||||||| | |||||||| || ||||||| |||||||| | ||||| ||||||| | ||||||||||||||||| |
|
|
| T |
30674865 |
gtattctcctatt-acaagagagaatg-taattgttctctccttatttttagtgagaggttgtataatttcttccacttag |
30674787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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