View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16308_low_1 (Length: 429)
Name: NF16308_low_1
Description: NF16308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16308_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 52511929 - 52512336
Alignment:
| Q |
14 |
atgaatagagttagtagaagaggacatgttcgtggggtggtggtgctgcataagatgaagatgaaaagaaaggttgtcatgatcatgagtagtaaatcta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52511929 |
atgaatagagttagtagaagaggacatgttcgtggggtggtggtgttgcataggatgaagatgaaaagaaaggttgtcatgatcatgagtagtaaatcta |
52512028 |
T |
|
| Q |
114 |
ctatgatgatggtcttgtaaattagcactaaatgatgttgatgaattagttaatagatgtaatgactgcatgttcatatccaaggatgtggtagaagacg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
52512029 |
ctatgatgatggtcttgtaaattagcactaaatgatgttgatgaattagttaatagatctaatgactgcatgttcatatccaaggatgtggtagcagacg |
52512128 |
T |
|
| Q |
214 |
aagacgagtaatgattcaagtttgatatatcgatgctcgggtgaatctggctactaatattattgttgcctctacttggagttggaatacttgtgtctcc |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512129 |
aagacgagtaatggttcaagtttgatatatcgatgctcgggtgaatctggctactaatattattgttgcctctacttggagttggaatacttgtgtctcc |
52512228 |
T |
|
| Q |
314 |
aaagttaggataattttcagcgttataaaattctcctcctgtaaaaagtgtcttgagcatgagagcattcatatccttgtgctcgtcaatattattattc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512229 |
aaagttaggataattttcagcgttataaaattctcctcctgtaaaaagtgtcttgagcatgagagcattcatatccttgtgctcgtcaatattattattc |
52512328 |
T |
|
| Q |
414 |
ttcatctc |
421 |
Q |
| |
|
|||||||| |
|
|
| T |
52512329 |
ttcatctc |
52512336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University