View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16308_low_10 (Length: 239)

Name: NF16308_low_10
Description: NF16308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16308_low_10
NF16308_low_10
[»] chr4 (8 HSPs)
chr4 (1-215)||(42769581-42769795)
chr4 (87-215)||(42743797-42743925)
chr4 (87-215)||(42753156-42753284)
chr4 (87-215)||(42762778-42762906)
chr4 (87-215)||(42717169-42717297)
chr4 (87-215)||(42734588-42734716)
chr4 (3-66)||(42762712-42762775)
chr4 (3-59)||(42734726-42734782)
[»] chr5 (1 HSPs)
chr5 (94-215)||(23040549-23040670)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 42769581 - 42769795
Alignment:
Q  1 atcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcatagcatccaccgcctacagcaagcggtggccaacataccttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42769581 atcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtctgcttcatagcatccaccgcccacagcaagcggtggccaacataccttat 42769680  T
Q  101 aggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcctcccgcggttgataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769681 aggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcctcccgcggttgataa 42769780  T
Q  201 agtatgtgaaccatg 215  Q
    |||||||||||||||    
T  42769781 agtatgtgaaccatg 42769795  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 42743797 - 42743925
Alignment:
Q  87 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 186  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||    
T  42743797 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcct 42743896  T
Q  187 cccgcggttgataaagtatgtgaaccatg 215  Q
    || || |||||||||||||||||||||||    
T  42743897 ccagcagttgataaagtatgtgaaccatg 42743925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 42753156 - 42753284
Alignment:
Q  87 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 186  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||    
T  42753156 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcct 42753255  T
Q  187 cccgcggttgataaagtatgtgaaccatg 215  Q
    || || |||||||||||||||||||||||    
T  42753256 ccagcagttgataaagtatgtgaaccatg 42753284  T

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Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 42762778 - 42762906
Alignment:
Q  87 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 186  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||    
T  42762778 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattagcaacgaaatttcct 42762877  T
Q  187 cccgcggttgataaagtatgtgaaccatg 215  Q
    || || ||||||||||| |||||||||||    
T  42762878 ccagcagttgataaagtgtgtgaaccatg 42762906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 42717169 - 42717297
Alignment:
Q  87 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 186  Q
    |||||| |||||||||||  |||||||||| || || ||||||||||||||||||||   ||||| |||||||||||||||||| |||||||||||||||    
T  42717169 ccaacaaaccttataggctacaactcgtgcttttggcgatccaccacttgctgttccattgccatagccaaatacacttgcattagcaacaaaatttcct 42717268  T
Q  187 cccgcggttgataaagtatgtgaaccatg 215  Q
    || || |||||||||||||||| ||||||    
T  42717269 ccggcagttgataaagtatgtgtaccatg 42717297  T

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Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 42734716 - 42734588
Alignment:
Q  87 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct 186  Q
    |||||| ||||||||||| | ||||||||| || || ||||||||||||||||||||    |||| |||||||||||||||||| |||||||||||||||    
T  42734716 ccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcct 42734617  T
Q  187 cccgcggttgataaagtatgtgaaccatg 215  Q
    || || |||||||||||||||||||||||    
T  42734616 ccagcagttgataaagtatgtgaaccatg 42734588  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 42762712 - 42762775
Alignment:
Q  3 cacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcatagcatcca 66  Q
    |||||||||||| |||  |||||||||||| ||||||||||||||||| || ||||| ||||||    
T  42762712 cacatcaacaccatcacttatggcagcttcaaaaccagccaaaatgtctgcatcataacatcca 42762775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 42734782 - 42734726
Alignment:
Q  3 cacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcata 59  Q
    |||||||||||| |||  |||||||||||| |||||||||||||| || || |||||    
T  42734782 cacatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcata 42734726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 23040670 - 23040549
Alignment:
Q  94 accttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcctcccgcgg 193  Q
    ||||||||||| |||||||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||  | |    
T  23040670 accttataggctgcaactcgagcttttggtgatccaccacttgctgttcctcggccattgccaaatacactcgcattagcaacgaaatttcctccaacag 23040571  T
Q  194 ttgataaagtatgtgaaccatg 215  Q
    ||||||||||||||||||||||    
T  23040570 ttgataaagtatgtgaaccatg 23040549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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