View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16308_low_8 (Length: 273)
Name: NF16308_low_8
Description: NF16308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16308_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 28678973 - 28678878
Alignment:
| Q |
171 |
tcaaaccctccggacccagatccgccgtcaaaaaacccaaaaagcccccacgtacccgccccaaactcactcccgagcttcttctatctgatgatg |
266 |
Q |
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| T |
28678973 |
tcaaaccctccggacccagatccgctgtcgaaaaacccaaaaagcctccacgtacccgccccaaactcactcccgagcttcttctatctgatgatg |
28678878 |
T |
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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 28679140 - 28679050
Alignment:
| Q |
13 |
agagaaaatgtcaggatccggaacagcaacaggttgttacaaatgcggcagaccaggtcactggtcacgcgactgtcctttcaccgccccc |
103 |
Q |
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| T |
28679140 |
agagaaaatgtcaggatccggaacagcaacaggttgttacaaatgcggcagacctggtcactggtcacgcgactgtcctttcacctccccc |
28679050 |
T |
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