View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16309_low_2 (Length: 267)
Name: NF16309_low_2
Description: NF16309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16309_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 56 - 261
Target Start/End: Complemental strand, 31793444 - 31793241
Alignment:
| Q |
56 |
ttaagccatccaacccaagataaatatttttcacgagtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtccttttctatctggtatg |
155 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |
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| T |
31793444 |
ttaagccatc--acccaagataaatatttttcaagagtaaaagcatacctttgacatgtgatattcaaaaatctccagccatccttttctatctggtatg |
31793347 |
T |
|
| Q |
156 |
ggaacatcaacaaggcgatcaaatcgcccatgtctcaacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgccttcatatt |
255 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31793346 |
ggaacatcaacacggcgatcaaatcgcccgtgtctcaacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgccttcatttt |
31793247 |
T |
|
| Q |
256 |
cttcga |
261 |
Q |
| |
|
||||| |
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| T |
31793246 |
gttcga |
31793241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 56 - 252
Target Start/End: Complemental strand, 32024976 - 32024781
Alignment:
| Q |
56 |
ttaagccatccaacccaagataaatatttttcacgagtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtccttttctatctggtatg |
155 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| || |
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| T |
32024976 |
ttaagccatccaacccaagataa-tatttttcaagagtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtccttcttcatcaggtttg |
32024878 |
T |
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| Q |
156 |
ggaacatcaacaaggcgatcaaatcgcccatgtctcaacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgccttcat |
252 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
32024877 |
cgaacaacaacaaggcgatcaaatcgcccatgtctcaacaaagcctcatctattaacttgtgagacttagtagcaccaatcacaattatgccttcat |
32024781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 77 - 252
Target Start/End: Complemental strand, 32013547 - 32013372
Alignment:
| Q |
77 |
aaatatttttcacgagtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtccttttctatctggtatgggaacatcaacaaggcgatca |
176 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||| |
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| T |
32013547 |
aaatatttttcaagagtaaaagcatacctttgacatgtgagattccaaaatctctcgccgtccttttacatctggattgggaacaacaacatggcgatca |
32013448 |
T |
|
| Q |
177 |
aatcgcccatgtctcaacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgccttcat |
252 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32013447 |
aatctcccatgtctcaacaaagccttatctattgactcgggagagttagtagcaccaatcacaattatgccttcat |
32013372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 252
Target Start/End: Original strand, 48131912 - 48132074
Alignment:
| Q |
90 |
gagtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtccttttctatctggtatgggaacatcaacaaggcgatcaaatcgcccatgtc |
189 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| | ||||||||||| | |||||| |||||||| ||||| ||||||||||||||||| ||| |
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| T |
48131912 |
gagtaaaagcataccttggacatgtgagattccaaaatttgtcgccgtccttctacatctggattgggaacaacaacatggcgatcaaatcgcccaggtc |
48132011 |
T |
|
| Q |
190 |
tcaacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgccttcat |
252 |
Q |
| |
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||| |||||||| ||||| ||| | | ||||||||||| ||| ||||||||||||||||| |
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|
| T |
48132012 |
tcaccaaagccttatctagtgattgaggtaagttagtagcagcaagcacaattatgccttcat |
48132074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 247
Target Start/End: Original strand, 48113020 - 48113165
Alignment:
| Q |
102 |
acctttgacatgtgatattccaaaatctctcgccgtccttttctatctggtatgggaacatcaacaaggcgatcaaatcgcccatgtctcaacaaagcct |
201 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| ||||||| | |||||| |||||||| ||||| ||||||||||||||||| |||| | |||||||| |
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| T |
48113020 |
acctttgacatgtgagattccaaaatctgtcggcgtccttctacatctggattgggaacaacaacatggcgatcaaatcgcccaggtctaaccaaagcct |
48113119 |
T |
|
| Q |
202 |
catctattgactcgtgagagttagtagcaccaatcacaattatgcc |
247 |
Q |
| |
|
||||| |||||| || | |||||||||||||||||||||||||| |
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| T |
48113120 |
tatctagtgactcaggaaaattagtagcaccaatcacaattatgcc |
48113165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 247
Target Start/End: Complemental strand, 48141949 - 48141793
Alignment:
| Q |
91 |
agtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtccttttctatctggtatgggaacatcaacaaggcgatcaaatcgcccatgtct |
190 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| |||| ||||||||||| | |||||| |||||||| ||||| |||||||||||| || |||| |
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| T |
48141949 |
agtaaaagaatacctttgacatgtgagattccaatatctgtcgccgtccttctacatctggattgggaacaacaacatggcgatcaaatcaccatggtct |
48141850 |
T |
|
| Q |
191 |
caacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgcc |
247 |
Q |
| |
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| |||||| | ||||| ||||||| || |||||||||||||||||||||||||| |
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| T |
48141849 |
taccaaagcattatctagtgactcgggatgattagtagcaccaatcacaattatgcc |
48141793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 247
Target Start/End: Complemental strand, 25254521 - 25254365
Alignment:
| Q |
91 |
agtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtccttttctatctggtatgggaacatcaacaaggcgatcaaatcgcccatgtct |
190 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| |||| ||||||||||| | |||||| |||||||| ||||| | |||||||||| || |||| |
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| T |
25254521 |
agtaaaagaatacctttgacatgtgagattccaatatctgtcgccgtccttctacatctggattgggaacaacaacatgacgatcaaatcaccatggtct |
25254422 |
T |
|
| Q |
191 |
caacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgcc |
247 |
Q |
| |
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| |||||| | ||||| ||||||| || |||||||||||||||||||||||||| |
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| T |
25254421 |
taccaaagcattatctagtgactcgggatgattagtagcaccaatcacaattatgcc |
25254365 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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