View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16309_low_3 (Length: 264)
Name: NF16309_low_3
Description: NF16309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16309_low_3 |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 63 - 264
Target Start/End: Original strand, 52869655 - 52869858
Alignment:
| Q |
63 |
tgcttccgcccaacatctcatcccacttcctattaatc-gtgtatttctacccaaggttggctagnnnnnnnggatttttctgtggggg-ctgctgctat |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |
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| T |
52869655 |
tgcttccgcccaacatctcatcccacttcctattaatcagtgtatttctacccaaggttggctagtttttttggatttttctgtggggggctgccgctat |
52869754 |
T |
|
| Q |
161 |
caatcaatttcacacctatttttgtggtaaacctttgtattttgcctatacttccacaccttgtgcttgttttattcttataatttaatttttgttgttg |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52869755 |
caatcaatttcacacctatttttgtggtaaacctttgtattttgcctatacttgcacaccttgtgcttgttttattcttataatttaatttttgttgttg |
52869854 |
T |
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| Q |
261 |
ttcc |
264 |
Q |
| |
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|||| |
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| T |
52869855 |
ttcc |
52869858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 38709324 - 38709399
Alignment:
| Q |
188 |
taaacctttgtattttgcctatacttccacaccttgtgcttgttttattcttataatttaatttttgttgttgttcc |
264 |
Q |
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||||||||||| |||| | ||||||| | | ||||||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
38709324 |
taaacctttgtgttttacgtatacttgcgcgccttgtggttgttttattctt-caatataatttttgttgttgttcc |
38709399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 63 - 264
Target Start/End: Original strand, 84585 - 84788
Alignment:
| Q |
63 |
tgcttccgcccaacatctcatcccacttcctattaatc-gtgtatttctacccaaggttggctagnnnnnnnggatttttctgtggggg-ctgctgctat |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |
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| T |
84585 |
tgcttccgcccaacatctcatcccacttcctattaatcagtgtatttctacccaaggttggctagtttttttggatttttctgtggggggctgccgctat |
84684 |
T |
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| Q |
161 |
caatcaatttcacacctatttttgtggtaaacctttgtattttgcctatacttccacaccttgtgcttgttttattcttataatttaatttttgttgttg |
260 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
84685 |
caatcaatttcacgcctatttttgtggtaaacctttgtattttgcctatacttgcacaccttgtgcttgttttattcttataatttaatttttgttgttg |
84784 |
T |
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| Q |
261 |
ttcc |
264 |
Q |
| |
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|||| |
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|
| T |
84785 |
ttcc |
84788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 63 - 264
Target Start/End: Original strand, 39148973 - 39149176
Alignment:
| Q |
63 |
tgcttccgcccaacatctcatcccacttcctattaatc-gtgtatttctacccaaggttggctagnnnnnnnggatttttctgtggggg-ctgctgctat |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |
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| T |
39148973 |
tgcttccgcccaacatctcatcccacttcctattaatcagtgtatttctacccaaggttggctaatttttttggatttttctgtggggggctgccgctat |
39149072 |
T |
|
| Q |
161 |
caatcaatttcacacctatttttgtggtaaacctttgtattttgcctatacttccacaccttgtgcttgttttattcttataatttaatttttgttgttg |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39149073 |
caatcaatttcacacctatttttgtggtaaacctttgtattttgcctatacttgcacaccttgtgcttgttttattcttataatttaatttttgttgttg |
39149172 |
T |
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| Q |
261 |
ttcc |
264 |
Q |
| |
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|||| |
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|
| T |
39149173 |
ttcc |
39149176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 41041133 - 41040930
Alignment:
| Q |
63 |
tgcttccgcccaacatctcatcccacttcctattaatc-gtgtatttctacccaaggttggctagnnnnnnnggatttttctgtggggg-ctgctgctat |
160 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |
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| T |
41041133 |
tgcttccgcccaacatctcatcccacttcctattaatcagtgtatttctacccaaggttggctagtttttttggatttttctgtggggggctgccgctat |
41041034 |
T |
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| Q |
161 |
caatcaatttcacacctatttttgtggtaaacctttgtattttgcctatacttccacaccttgtgcttgttttattcttataatttaatttttgttgttg |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
41041033 |
caatcaatttcacacctatttttgtggtaaacctttgtattttgcctatacttgcacaccttatgcttgttttattcctataatttaatttttgttgttg |
41040934 |
T |
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| Q |
261 |
ttcc |
264 |
Q |
| |
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|||| |
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| T |
41040933 |
ttcc |
41040930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 29149325 - 29149273
Alignment:
| Q |
187 |
gtaaacctttgtat--tttgcctatacttccacaccttgtgcttgttttattc |
237 |
Q |
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|||||||||||||| ||||||||||||| |||||||| |||||||||||||| |
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| T |
29149325 |
gtaaacctttgtatattttgcctatacttgcacaccttatgcttgttttattc |
29149273 |
T |
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