View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16309_low_7 (Length: 245)
Name: NF16309_low_7
Description: NF16309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16309_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 32061136 - 32061343
Alignment:
| Q |
21 |
aaagccatttatcatctcctcgatttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactaatttaatc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32061136 |
aaagccatttatcatctcctcgatttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactgatttaatc |
32061235 |
T |
|
| Q |
121 |
ataatctcccttctcgctttagacaaacacttactactccagatattgatcttttgccatactctatccaaatacttgctagtttccagcactgcccgca |
220 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32061236 |
ataatctcctttctcgctttagaaaaacacttactactccagatattgatcttttgccatactctatccaaatacttgctagtttccagcactgcccgca |
32061335 |
T |
|
| Q |
221 |
cacctaat |
228 |
Q |
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|||||||| |
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| T |
32061336 |
cacctaat |
32061343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 3237043 - 3236931
Alignment:
| Q |
73 |
aaaatactcatcacatatgatggaattgactaaagcactaatttaatcataatctcccttctcgctttagacaaacacttactactccagatattgatct |
172 |
Q |
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||||| |||||||||||||| |||||||||| ||| || | |||||||||| |||||||| | | ||||||||||||| ||||||||| |||| || |
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| T |
3237043 |
aaaatgctcatcacatatgagggaattgactgaaggacagacttaatcataacctcccttccagatctagacaaacacttgctactccagctattaattc |
3236944 |
T |
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| Q |
173 |
tttgccatactct |
185 |
Q |
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||||||| ||||| |
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| T |
3236943 |
tttgccacactct |
3236931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 34933637 - 34933491
Alignment:
| Q |
43 |
atttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactaatttaatcataatctcccttctcgctttag |
142 |
Q |
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||||| ||||||||||| || ||||| | || |||||||| ||||| |||||||| | | ||| || |||| ||||||| |||||| | ||||||| |
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| T |
34933637 |
atttcctctagtaatgtgtttggtaacctaaagatactcatgacataagatggaatagcttgaagaacagatttgatcataacctccctcccggctttag |
34933538 |
T |
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| Q |
143 |
acaaacacttactactccagatattgatcttttgccatactctatcc |
189 |
Q |
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| T |
34933537 |
acaaacatttactgctccagctactgattctttgccacactctatcc |
34933491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 188
Target Start/End: Original strand, 8969993 - 8970103
Alignment:
| Q |
78 |
actcatcacatatgatggaattgactaaagcactaatttaatcataatctcccttctcgctttagacaaacacttactactccagatattgatcttttgc |
177 |
Q |
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|||||| ||||| |||||||| || | ||| || |||| ||||| | |||||||| |||||||||||||| ||||| |||||| || | ||||| ||| |
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| T |
8969993 |
actcataacataggatggaatagattgaagaacagatttgatcatgacctcccttcctgctttagacaaacatttactgctccagctactaatcttctgc |
8970092 |
T |
|
| Q |
178 |
catactctatc |
188 |
Q |
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|| |||||||| |
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| T |
8970093 |
cacactctatc |
8970103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 4166761 - 4166664
Alignment:
| Q |
91 |
gatggaattgactaaagcactaatttaatcataatctcccttctcgctttagacaaacacttactactccagatattgatcttttgccatactctatc |
188 |
Q |
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|||||||| || | ||| ||| |||| ||||| | |||||||| ||||||||||| || || ||||||||| |||||||||| |||||||||||||| |
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| T |
4166761 |
gatggaatagattgaagaactgatttgatcatgacctcccttcctgctttagacaagcatttgctactccagctattgatcttctgccatactctatc |
4166664 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 39530785 - 39530618
Alignment:
| Q |
21 |
aaagccatttatcatctcctcgatttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactaatttaatc |
120 |
Q |
| |
|
|||| |||| ||||||| |||||||| || ||||| ||||| ||||| |||| || ||||| ||||| || | || |||| ||| ||| |||| ||| |
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| T |
39530785 |
aaaggcattcatcatcttttcgatttcctcaagtaaagtattcggtaacctgaagatgctcataacatacgacgagatagactgaagaactgatttgatc |
39530686 |
T |
|
| Q |
121 |
ataatctcccttctcgctttagacaaacacttactactccagatattgatcttttgccatactctatc |
188 |
Q |
| |
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|||| || | || ||||||||||| ||||||||||||||| |||| || || ||||| |||||||| |
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| T |
39530685 |
ataacatctcgtcccgctttagacagacacttactactccaactatttattttctgccacactctatc |
39530618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 21086558 - 21086688
Alignment:
| Q |
31 |
atcatctcctcgatttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactaatttaatcataatctccc |
130 |
Q |
| |
|
||||||| ||| |||||||||| || || || |||||| |||| |||||||| ||||| |||||||| || | ||| || |||| ||||| | |||| |
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| T |
21086558 |
atcatcttctcaatttcatctaacaaagtgtttggtaatctgaagatactcataacataggatggaatagattgaagaaccgattttatcatgacttccc |
21086657 |
T |
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| Q |
131 |
ttctcgctttagacaaacacttactactcca |
161 |
Q |
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||| |||||||||||||| ||||| ||||| |
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| T |
21086658 |
ttcctgctttagacaaacatttactgctcca |
21086688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 37590073 - 37589980
Alignment:
| Q |
29 |
ttatcatctcctcgatttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactaatttaatcat |
122 |
Q |
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|
||||||||| ||| || ||||||| ||| | ||| || | ||||||||||||||||||||||| || |||||| ||| || ||||||||||| |
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| T |
37590073 |
ttatcatcttctcaatctcatctaataaagaatttggcagcttgaaaatactcatcacatatgaggggattgacagaagaacaaatttaatcat |
37589980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 19234033 - 19233945
Alignment:
| Q |
73 |
aaaatactcatcacatatgatggaattgactaaagcactaatttaatcataatctcccttctcgctttagacaaacacttactactcca |
161 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| || || |||||||||||| ||| | | |||||||| ||||||||||||||||| |
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| T |
19234033 |
aaaatactcataacatacgatggaatagactgtaggacggatttaatcataacctcacgccctgctttagataaacacttactactcca |
19233945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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