View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16309_low_8 (Length: 216)

Name: NF16309_low_8
Description: NF16309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16309_low_8
NF16309_low_8
[»] chr4 (1 HSPs)
chr4 (12-209)||(38116272-38116460)
[»] chr8 (2 HSPs)
chr8 (12-209)||(45113687-45113898)
chr8 (12-41)||(11288320-11288349)
[»] chr5 (1 HSPs)
chr5 (12-103)||(1015885-1015973)
[»] chr3 (2 HSPs)
chr3 (105-181)||(22776232-22776309)
chr3 (68-113)||(22776157-22776202)
[»] chr7 (1 HSPs)
chr7 (149-209)||(34351873-34351933)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 38116272 - 38116460
Alignment:
Q  12 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggctggttcggctgagactgctgatgttagcagcagtttctg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  38116272 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggct---------gagactgctgatgttagcagcagtttctg 38116362  T
Q  112 tttggttgtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttggatggttgttgttgttggaattgatgatg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38116363 tttggttgtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttggatggttgttgttgttggaattgatgatg 38116460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 45113687 - 45113898
Alignment:
Q  12 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggctggttcggctgagactgctgatgttag------------ 99  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||    |||||| |||||||||||||||||| ||||||                
T  45113687 atcatcatagttgaaaagggtaggagcaagtctttgagaaagatgtcagtggt---tgggctagttcggctgagactgctgctgttagtagctgctagct 45113783  T
Q  100 -------cagcagtttctgtttggttgtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttggatggttgttgt 192  Q
           |||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||| |  ||| |||||    
T  45113784 gcgtgtgcagctgtttctgtttggttgtggcagctagggtgtggccgatttaggtattggtttggaacaactgctggtgcatttttttg--ggtggttgt 45113881  T
Q  193 tgttggaattgatgatg 209  Q
    |||||||||||||||||    
T  45113882 tgttggaattgatgatg 45113898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 11288320 - 11288349
Alignment:
Q  12 atcatcatagttgaaaagggtaggagcagg 41  Q
    ||||||||||||||||||||||||||||||    
T  11288320 atcatcatagttgaaaagggtaggagcagg 11288349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 1015885 - 1015973
Alignment:
Q  12 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggctggttcggctgagactgctgatgttagcagc 103  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||| ||   ||||||||||||||||||||||||| || ||||||||||    
T  1015885 atcatcataactgaaaagggtaggagcaggtctttgagaaatatgtctgt---ggctgggctggttcggctgagactgttgctgttagcagc 1015973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 22776232 - 22776309
Alignment:
Q  105 gtttctgtttggttgtggcagcta-tggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttgg 181  Q
    ||||||||||||||||||||||||  || || ||||||||| || |||||||||| || ||||||||| |||||||||    
T  22776232 gtttctgtttggttgtggcagctaggggcgttgccggtttacgttttggtttggaacagctgctggtgtgttttttgg 22776309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 22776157 - 22776202
Alignment:
Q  68 tgggctggttcggctgagactgctgatgttagcagcagtttctgtt 113  Q
    |||||||||||||||||||||| || |||||||||| ||| |||||    
T  22776157 tgggctggttcggctgagactgttgctgttagcagctgttgctgtt 22776202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 34351933 - 34351873
Alignment:
Q  149 ttggtttggagcaactgctggtgcgttttttggatggttgttgttgttggaattgatgatg 209  Q
    ||||| |||||||| || ||||| | ||||||| ||||||||| |||||||||||||||||    
T  34351933 ttggtgtggagcaaatgttggtgtggtttttgggtggttgttgctgttggaattgatgatg 34351873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University