View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1630_high_1 (Length: 615)
Name: NF1630_high_1
Description: NF1630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1630_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 167 - 597
Target Start/End: Original strand, 37600066 - 37600502
Alignment:
| Q |
167 |
tgatatttgcagtaatggttggtataatagtgagatgaagaaaatatttgtagtgtcaatttatacaaatgaaacggtgattcgtagcaagaaatcatat |
266 |
Q |
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| T |
37600066 |
tgatatttgcagtaatggttggtataatagtgagatgaagaaaatatttgtagtgtcaatttatacaaatgaaatggtgattcgtagcaagaaatcatat |
37600165 |
T |
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| Q |
267 |
atctttggaaaaggatctttatgtgagtatacaggagagaacattttttatactgttcacacggagcagctagtggtgaaagcaaaagggtgtgttctct |
366 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37600166 |
atctttggaaaaggatctttatgtgagtatacaagagagaacattttttatactgttcacacggagcagctagtggtgaaagcaaaagggtgtgttctct |
37600265 |
T |
|
| Q |
367 |
gtttgctcacctaaaatcatatatctactcacctaatcaaactaaactctcaaatcaaagagttcctcatcgggg------ttggctagttgttatcttt |
460 |
Q |
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| T |
37600266 |
gtttactcacctaaaatcatatatctactcacctaatcaaactaaactctcaaatcaaagagtccctcatcggggattttcttggctagttgttatcttt |
37600365 |
T |
|
| Q |
461 |
gatgtcaattactccatgcaggagtgatcgaaataaaattttgttgactctaaataaataattaaactcaagtggttaatgtgttcactaaaggacaaat |
560 |
Q |
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| T |
37600366 |
gatgtctattactctgtgcaggactgaccgaaataaaattttgttgactctaaataaataattggactcaagtggttaatgtgttcactaaaagataaat |
37600465 |
T |
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| Q |
561 |
cgtttaaaagaatttgagtttaatttatggtgcaaca |
597 |
Q |
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| T |
37600466 |
cgtttgaaagaattcgagtttaatttatggtgcaaca |
37600502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 14 - 153
Target Start/End: Original strand, 37599413 - 37599555
Alignment:
| Q |
14 |
aatatcaaaacttataatctccatagatg---ccaataagacctgaactgaaatgataaacagaagcatttgcatgattagaagccacattagctcggga |
110 |
Q |
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| T |
37599413 |
aatatcaaaacttataatctccatagatgatgccaataagacctgaactgaaatgataaacagaagcatttgcatgattagaagccacattagctcggga |
37599512 |
T |
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| Q |
111 |
tcattttcaatagcctctaaaatttcatagggaaggcgcattt |
153 |
Q |
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| T |
37599513 |
tcattttcaatagcctctaaaatttcatagggaaggcgcattt |
37599555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 204 - 305
Target Start/End: Original strand, 37606415 - 37606516
Alignment:
| Q |
204 |
aagaaaatatttgtagtgtcaatttatacaaatgaaacggtgattcgtagcaagaaatcatatatctttggaaaaggatctttatgtgagtatacaggag |
303 |
Q |
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| T |
37606415 |
aagaaaatatttgtagtatcaatttatacaaatgcaatggagattggtagcaagaaatcatatatctttggagaaggatctatatgtgggtatgcaagag |
37606514 |
T |
|
| Q |
304 |
ag |
305 |
Q |
| |
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|| |
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|
| T |
37606515 |
ag |
37606516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 34750991 - 34751057
Alignment:
| Q |
222 |
tcaatttatacaaatgaaacggtgattcgtagcaagaaatcatatatcttt-ggaaaaggatcttta |
287 |
Q |
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|||||||||||||||| | || |||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
34750991 |
tcaatttatacaaatgctatggagattggtagcaagaaatcatatatctttgggaaaaggatcttta |
34751057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 586
Target Start/End: Original strand, 3678451 - 3678483
Alignment:
| Q |
554 |
gacaaatcgtttaaaagaatttgagtttaattt |
586 |
Q |
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| T |
3678451 |
gacaaatcgtttaaaagaatttgagtttgattt |
3678483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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