View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1630_high_6 (Length: 243)
Name: NF1630_high_6
Description: NF1630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1630_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 34986481 - 34986261
Alignment:
| Q |
9 |
agcagagaaatactacaaagtggaagctaaagagctaggatcatagattaaaactcatgctgattttacaaggacaaaaactatgtgtaactcatagtta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34986481 |
agcagagaaatactacaaagtggaagctaaagagctaggatcatagattaaaactcatgctgattttacaaggacaaaaactatgtgtaactcatagtta |
34986382 |
T |
|
| Q |
109 |
ttaaatagaatatatgatccaaactttggaatctcaagaccaatatcacgtcatgttcagcttatatggtgtgtcatgtacgattgattaggcttgcggt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34986381 |
ttaaatagaatatatgatccaaactttggaatctcaagaccaatatcacgtcatgttcagcttatatggcgtgtcatgtacgattgattaggcttgcggt |
34986282 |
T |
|
| Q |
209 |
tgattttatggattgtaactg |
229 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34986281 |
tgattttatggattgtaactg |
34986261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 34993289 - 34993081
Alignment:
| Q |
17 |
aatactacaaagtggaagctaaagagctaggatcatagattaaaactcatgctgattttacaaggacaaaaactatgtgtaactcatagttattaaatag |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
34993289 |
aatactacaaagtggatgctaaagagctaggaccatagattaaaactcatgctgattttacaaggacaaaaactatgtgcaactcatag-tattaaatag |
34993191 |
T |
|
| Q |
117 |
aatatatgatccaaactttggaatctcaagaccaatatcacgtcatgttcagcttatatggtgtgtcatgtacgattgattaggcttgcggttgatttta |
216 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||| || |||||| ||||||| ||||| ||| || || ||||| ||||||||| || ||||| |||||| |
|
|
| T |
34993190 |
aacatatggtccaaactttggaatctcaagacc-atctcacgttatgttcaccttatgtggcgtatcttgtacaattgattagactcccggttaatttta |
34993092 |
T |
|
| Q |
217 |
tggattgtaac |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
34993091 |
tggattgtaac |
34993081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 34986563 - 34986511
Alignment:
| Q |
56 |
ttaaaactcatgctgattttacaaggacaaaaactatgtgtaactcatagtta |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34986563 |
ttaaatctcatgctgattttacaaggacaaaaactatgtgtaactcatagtta |
34986511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 19326167 - 19326104
Alignment:
| Q |
24 |
caaagtggaagctaaagagctaggatcatagattaaaactcatgctga-ttttacaaggacaaa |
86 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
19326167 |
caaagaggaagctaaagagctaggactatagattaaaactcatggtgatttttacaaggacaaa |
19326104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University